ID
45670
Description
Principal Investigator: Faruk Hadziselimovic, MD, Cryptorchidism Research Institute, Kindermedizinisches Zentrum Liestal, Switzerland MeSH: Cryptorchidism,Idiopathic Hypogonadotropic Hypogonadism https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001275 Differential Gene Expression in Cryptorchid Testes Study uses whole-genome RNA profiling of testicular biopsies to determine a potential causative role of isolated congenital cryptorchidism in azoospermia and/or infertility in the context of our previously published GeneChip data. Cryptorchid patients, aged 7 months to 5 years and otherwise healthy, were enrolled in this prospective study. During surgery, testicular tissue biopsies were obtained for histological examination and RNA-sequencing (RNA-seq). Fifteen patients were selected based on the histological results and were divided into two groups. Seven were classified as belonging to the high infertility risk (HIR) and eight to the low infertility risk (LIR) group. Cryptorchid boys in the high infertility risk group lacked transformation of gonocytes into Ad spermatogonia due to impaired mini puberty. This group of patients will be infertile despite successful surgery.
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Versions (1)
- 04/04/2023 04/04/2023 - Simon Heim
Détendeur de droits
Faruk Hadziselimovic, MD, Cryptorchidism Research Institute, Kindermedizinisches Zentrum Liestal, Switzerland
Téléchargé le
4 avril 2023
DOI
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Licence
Creative Commons BY 4.0
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dbGaP phs001275 Differential Gene Expression in Cryptorchid Testes
Eligibility Criteria
- StudyEvent: SEV1
- Eligibility Criteria
- The subject consent file includes subject IDs, consent information, subject aliases, and case control status of the subject for cryptorchidism.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table contains subject ID, patient ID used in 2016 or 2017 publications, age at time of biopsy, and gender.
- This sample attributes table contains sample IDs, isolated RNA concentration, RNA integrity number, file name of sequence raw data, body site where sample was collected, analyte type, histological type, disease name, and name of the center which conducted genotyping or sequencing.
Similar models
Eligibility Criteria
- StudyEvent: SEV1
- Eligibility Criteria
- The subject consent file includes subject IDs, consent information, subject aliases, and case control status of the subject for cryptorchidism.
- This data table contains a mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table contains subject ID, patient ID used in 2016 or 2017 publications, age at time of biopsy, and gender.
- This sample attributes table contains sample IDs, isolated RNA concentration, RNA integrity number, file name of sequence raw data, body site where sample was collected, analyte type, histological type, disease name, and name of the center which conducted genotyping or sequencing.
C0680251 (UMLS CUI [1,2])
C0876920 (UMLS CUI [1,2])
C0001779 (UMLS CUI [1,3])
C4489231 (UMLS CUI [1,4])
C0458083 (UMLS CUI [1,5])
C0543467 (UMLS CUI [1,6])
C0679227 (UMLS CUI [1,7])
C0457932 (UMLS CUI [1,8])
C0018246 (UMLS CUI [1,9])
C0031809 (UMLS CUI [1,10])
C0000768 (UMLS CUI [1,11])
C0243161 (UMLS CUI [1,12])
C0007328 (UMLS CUI [1,13])
C2828389 (UMLS CUI [2,1])
C0241355 (UMLS CUI [2,2])
C0240701 (UMLS CUI [2,3])
C3846158 (UMLS CUI [2,4])
C0018418 (UMLS CUI [2,5])
C1858586 (UMLS CUI [2,6])
C0455276 (UMLS CUI [3,1])
C1268933 (UMLS CUI [3,2])
C0428412 (UMLS CUI [3,3])
C1533582 (UMLS CUI [3,4])
C1518422 (UMLS CUI [4,1])
C5189582 (UMLS CUI [4,2])
C1457887 (UMLS CUI [4,3])
C0020514 (UMLS CUI [4,4])
C0032002 (UMLS CUI [4,5])
C0010481 (UMLS CUI [4,6])
C0008679 (UMLS CUI [4,7])
C3714660 (UMLS CUI [4,8])
C0543467 (UMLS CUI [4,9])
C0026882 (UMLS CUI [4,10])
C0032897 (UMLS CUI [4,11])
C0442893 (UMLS CUI [4,12])
C0018995 (UMLS CUI [4,13])
C0036202 (UMLS CUI [4,14])
C1455705 (UMLS CUI [4,15])