ID

45648

Description

Principal Investigator: Ghislaine Scélo, PhD, International Agency for Research on Cancer (IARC), Lyon, France MeSH: Carcinoma, Renal Cell,Kidney Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001271 Incidence rates of renal cell carcinoma (RCC) are rising and the latest estimates show that it accounts for over 300,000 cases and 120,000 deaths worldwide each year. Mechanisms underlying RCC occurrence are not fully understood and a large part of the disease heritability remains unexplained. The study aimed at augmenting the size of available RCC genome-wide association studies to increase the statistical power to detect genetic variants associated with the disease. The study includes genome-wide genotyping data from RCC cases (n=2,781) and controls (n=2,526) recruited in Western Europe, Central and Eastern Europe, and Australia.

Link

dbGaP study = phs001271

Keywords

  1. 3/20/23 3/20/23 - Simon Heim
Copyright Holder

Ghislaine Scélo, PhD, International Agency for Research on Cancer (IARC), Lyon, France

Uploaded on

March 20, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs001271 Pooled Genome-Wide Analysis of Kidney Cancer Risk (KIDRISK)

This sample attributes table contains sample IDs, body site, analyte type, DNA sample whole-genome amplified, tumor status, and name of the center which conducted genotyping.

pht006119
Description

pht006119

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
DNA sample whole-genome amplified
Description

WGA

Data type

string

Alias
UMLS CUI [1,1]
C0012854
UMLS CUI [1,2]
C1520146
DNA from tumor
Description

IS_TUMOR

Data type

string

Alias
UMLS CUI [1,1]
C0012854
UMLS CUI [1,2]
C0027651
Name of the center which conducted genotyping
Description

GENOTYPING_CENTER

Data type

string

Alias
UMLS CUI [1,1]
C0027651
UMLS CUI [1,2]
C5575037
UMLS CUI [1,3]
C1285573

Similar models

This sample attributes table contains sample IDs, body site, analyte type, DNA sample whole-genome amplified, tumor status, and name of the center which conducted genotyping.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht006119
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
WGA
Item
DNA sample whole-genome amplified
string
C0012854 (UMLS CUI [1,1])
C1520146 (UMLS CUI [1,2])
IS_TUMOR
Item
DNA from tumor
string
C0012854 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
GENOTYPING_CENTER
Item
Name of the center which conducted genotyping
string
C0027651 (UMLS CUI [1,1])
C5575037 (UMLS CUI [1,2])
C1285573 (UMLS CUI [1,3])

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