ID

45646

Description

Principal Investigator: Neal Freedman, PhD, MPH, National Cancer Institute, Rockville, MD, USA MeSH: Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001286 The Prostate, Lung, Colorectal and Ovarian (PLCO) Cancer Screening Trial is a large population-based randomized trial designed and sponsored by the National Cancer Institute (NCI) to determine the effects of screening on cancer-related mortality and secondary endpoints in over 150,000 men and women aged 55 to 74. The screening component of the trial was completed in 2006. However, participants have been under follow-up for cancer incidence and mortality since that time. In addition, PLCO included a large biological sample biorepository which has served as a unique resource for cancer research, particularly for etiologic and early-marker studies. As part of these efforts, PLCO has been used for a large number of genome-wide association and exome sequencing studies for different types of cancer.

Link

dbGaP study = phs001286

Keywords

  1. 3/20/23 3/20/23 - Simon Heim
Copyright Holder

Neal Freedman, PhD, MPH, National Cancer Institute, Rockville, MD, USA

Uploaded on

March 20, 2023

DOI

To request one please log in.

License

Creative Commons BY 4.0

Model comments :

You can comment on the data model here. Via the speech bubbles at the itemgroups and items you can add comments to those specificially.

Itemgroup comments for :

Item comments for :

In order to download data models you must be logged in. Please log in or register for free.

dbGaP phs001286 The Prostate, Lung, Colon, Ovary Screening Trial (PLCO)

Sample ID, histological type of sample, body site where sample was obtained, analyte type, tumor status of sample, and array platform of participants with or without prostate, lung, colon, and ovary cancer and involved in the "The Prostate, Lung, Colon, Ovary Screening Trial (PLCO)" project.

pht007890
Description

pht007890

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Histological Type [Whole Blood, Buccal Cell, Buffy Coat, Buffy Coat & RBC, Buffy Coat & Whole Blood]
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C0449574
UMLS CUI [1,2]
C1608383
UMLS CUI [1,3]
C5419552
UMLS CUI [1,4]
C2936475
UMLS CUI [1,5]
C0014792
Body site where sample was collected [Peripheral Blood, Inner Oral Cavity,
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
UMLS CUI [1,2]
C5401001
UMLS CUI [1,3]
C0226896
Analyte Type [DNA]
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

string

Alias
UMLS CUI [1,1]
C0475752
Platform used for genotyping [Illumina_1M, Illumina_2.5M, Illumina_317K, Illumina_550K, Illumina_610K, Illumina_660W, Illumina_HAP1, Illumina_OmniX]
Description

Array_Platform

Data type

string

Alias
UMLS CUI [1,1]
C1285573
UMLS CUI [1,2]
C1710360
UMLS CUI [1,3]
C4687476

Similar models

Sample ID, histological type of sample, body site where sample was obtained, analyte type, tumor status of sample, and array platform of participants with or without prostate, lung, colon, and ovary cancer and involved in the "The Prostate, Lung, Colon, Ovary Screening Trial (PLCO)" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht007890
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
HISTOLOGICAL_TYPE
Item
Histological Type [Whole Blood, Buccal Cell, Buffy Coat, Buffy Coat & RBC, Buffy Coat & Whole Blood]
string
C0449574 (UMLS CUI [1,1])
C1608383 (UMLS CUI [1,2])
C5419552 (UMLS CUI [1,3])
C2936475 (UMLS CUI [1,4])
C0014792 (UMLS CUI [1,5])
BODY_SITE
Item
Body site where sample was collected [Peripheral Blood, Inner Oral Cavity,
string
C0449705 (UMLS CUI [1,1])
C5401001 (UMLS CUI [1,2])
C0226896 (UMLS CUI [1,3])
ANALYTE_TYPE
Item
Analyte Type [DNA]
string
C4744818 (UMLS CUI [1,1])
IS_TUMOR
Item
Tumor status
string
C0475752 (UMLS CUI [1,1])
Array_Platform
Item
Platform used for genotyping [Illumina_1M, Illumina_2.5M, Illumina_317K, Illumina_550K, Illumina_610K, Illumina_660W, Illumina_HAP1, Illumina_OmniX]
string
C1285573 (UMLS CUI [1,1])
C1710360 (UMLS CUI [1,2])
C4687476 (UMLS CUI [1,3])

Please use this form for feedback, questions and suggestions for improvements.

Fields marked with * are required.

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial