ID

45637

Beskrivning

Principal Investigator: Hernan A. Lorenzi, PhD, The J. Craig Venter Insititute, Rockville, MD, USA MeSH: Malaria,Malaria, Falciparum,Malaria Vaccines,Transcriptome,Gene Expression Profiling https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001346 Description: Experimental exposure to malaria parasites can lead to development of protective immunity, providing a foothold for the development of a malaria vaccine. The goal of this study is to investigate immune transcriptional profiles associated with malaria protective immune responses induced by experimental Chemo-Prophylaxis and Sporozoites (CPS) immunization of P. *falciparum*-naive human volunteers. Samples for this study were obtained from a CPS-immunization study conducted in 2011 (ClinicalTrials.gov Identifier: NCT01218893), where healthy volunteers received CPS-immunization with bites from different numbers of P. *falciparum*-infected mosquitoes (three times 15 (n=5), 10 (n=9) or 5 (n=10)). Five control subjects received uninfected mosquito bites under chloroquine prophylaxis. Fifteen weeks after discontinuation of chloroquine prophylaxis, all volunteers were challenged by exposure to infected mosquito bites. Study Design: A maximum of 30 volunteers were divided into four groups. All volunteers received weekly chloroquine prophylaxis for a period of 13 weeks (91 days). During these 13 weeks, on days 8, 36 and 64 they were exposed to the bites of 15 mosquitoes. Group 1 (n=5, positive control) received three CPS immunizations by 15 mosquitoes infected with P. falciparum sporozoites. Group 2 (n=10) received three times 10 bites from infected mosquitoes and 5 bites from uninfected mosquitoes. Group 3 (n=10) received three times 5 bites from infected mosquitoes and 10 bites from uninfected mosquitoes. Group 4 (n=5), the negative control, received three placebo immunizations with 15 bites of uninfected mosquitoes. Fifteen weeks after discontinuation of chloroquine prophylaxis, all 30 volunteers were challenged at day 196 by the bites of 5 infectious mosquitoes and followed for 21 days. All subjects were treated with chloroquine 21 days after challenge or whenever they had a positive thick smear during that period.

Länk

dbGaP-study=phs001346

Nyckelord

  1. 2023-03-11 2023-03-11 - Chiara Middel
Rättsinnehavare

Hernan A. Lorenzi, PhD, The J. Craig Venter Insititute, Rockville, MD, USA

Uppladdad den

11 mars 2023

DOI

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Licens

Creative Commons BY 4.0

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dbGaP phs001346 Human Gene Expression Patterns Associated with Experimental P. falciparum Infection

Sample ID, analyte type, body site where sample was obtained, clinical outcome, experimental stage, histological type of sample, tumor status of sample, sequence center, and time point of sample collection of participants involved in the "Human Gene Expression Patterns Associated with Experimental P. falciparum Infection" project.

pht006257
Beskrivning

pht006257

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
Analyte type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
The type of sample, cell or tissue type or subtype of the sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347029
UMLS CUI [1,2]
C0449475
UMLS CUI [1,3]
C2713035
UMLS CUI [1,4]
C0449560
Tumor status of the sample
Beskrivning

IS_TUMOR

Datatyp

string

Alias
UMLS CUI [1,1]
C0475752
Name of the center which conducted sequencing
Beskrivning

SEQUENCING_CENTER

Datatyp

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491
Experimental stage
Beskrivning

GROUP

Datatyp

string

Alias
UMLS CUI [1,1]
C3846158
Time point of sample collection
Beskrivning

TIME_POINT

Datatyp

string

Måttenheter
  • Days
Alias
UMLS CUI [1,1]
C0011008
UMLS CUI [1,2]
C0040223
UMLS CUI [1,3]
C0200345
Days
Type of vaccination
Beskrivning

VACCINATION_GROUP

Datatyp

text

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0042196
Clinical outcome after challenge
Beskrivning

CLINICAL_OUTCOME

Datatyp

string

Alias
UMLS CUI [1,1]
C1547647
UMLS CUI [1,2]
C0231290
UMLS CUI [1,3]
C0805586

Similar models

Sample ID, analyte type, body site where sample was obtained, clinical outcome, experimental stage, histological type of sample, tumor status of sample, sequence center, and time point of sample collection of participants involved in the "Human Gene Expression Patterns Associated with Experimental P. falciparum Infection" project.

Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht006257
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
The type of sample, cell or tissue type or subtype of the sample
string
C2347029 (UMLS CUI [1,1])
C0449475 (UMLS CUI [1,2])
C2713035 (UMLS CUI [1,3])
C0449560 (UMLS CUI [1,4])
IS_TUMOR
Item
Tumor status of the sample
string
C0475752 (UMLS CUI [1,1])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])
GROUP
Item
Experimental stage
string
C3846158 (UMLS CUI [1,1])
TIME_POINT
Item
Time point of sample collection
string
C0011008 (UMLS CUI [1,1])
C0040223 (UMLS CUI [1,2])
C0200345 (UMLS CUI [1,3])
Item
Type of vaccination
text
C0332307 (UMLS CUI [1,1])
C0042196 (UMLS CUI [1,2])
Code List
Type of vaccination
CL Item
3 x 15 bites (1)
CL Item
3 x 10 bites (2)
CL Item
3 x 5 bites (3)
CL Item
control (4)
C3274648 (UMLS CUI [1,1])
CLINICAL_OUTCOME
Item
Clinical outcome after challenge
string
C1547647 (UMLS CUI [1,1])
C0231290 (UMLS CUI [1,2])
C0805586 (UMLS CUI [1,3])

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