ID

45607

Descripción

Principal Investigator: Deborah C. Mash, PhD, University of Miami, FL, USA MeSH: Cocaine-Related Disorders https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001377 This project characterizes DNA methylation and gene expression changes that occur in the human brain, specifically in neurons from the rostral striatum. Major advances from NIDA funded initiatives for noninvasive neuroimaging studies have made it possible to study neuroanatomical, neurochemical and functional changes in the human brain that contribute to the vulnerability to abuse drugs, together with the neurotoxic consequences of years of drug misuse. Animal models have been developed to explain the fundamental behavioral and biological mechanisms of addiction, including reward, tolerance and dependence. From these studies, we learned that cocaine abuse not only alters the epigenetic status of genes, but also induces particular epigenetic modifications depending on the frequency of the drug's administration. Certain genes are switched on by infrequent (short-term exposure) administration, while others are switched on only after chronic administration (addiction/dependence). Animal studies have also suggested that cocaine-seeking habits modeling chronic cocaine addiction in humans depend upon dopamine-dependent serial connectivity linking the ventral (nucleus accumbens) with the dorsal striatum (caudate nucleus). The primary goal of this study is to identify DNA methylation and gene expression changes that occur in the transition from recreational cocaine use to cocaine addiction. High throughput sequencing studies were designed to investigate unique postmortem human brain specimens from individuals that met criteria for cocaine dependence, as compared to unaffected age-matched controls. Brain biospecimens were available from the University of Miami Brain Endowment BankTM, from a collection of phenotypically well-characterized postmortem tissues sampled from chronic cocaine abusers that came to autopsy. This biobank of postmortem brain specimens and annotated genomic data serve as a research resource to support NIDA's scientific mission.

Link

dbGaP-study=phs001377

Palabras clave

  1. 20/2/23 20/2/23 - Chiara Middel
Titular de derechos de autor

Deborah C. Mash, PhD, University of Miami, FL, USA

Subido en

20 de febrero de 2023

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs001377 Epigenetics of Cocaine and Nicotine Addiction

Eligibility Criteria

Inclusion and exclusion criteria
Descripción

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
**Inclusion Criteria:Cocaine Dependent Subjects (DSM-IV)**
Descripción

Elig.phs001377.v1.p1.1

Tipo de datos

boolean

Alias
UMLS CUI [1,1]
C0220952
UMLS CUI [1,2]
C1512693
UMLS CUI [1,3]
C0009170
UMLS CUI [1,4]
C0038580
Age: 18 - 55 years Gender: Males and Females DSM-IV Cocaine Dependence PMI < 24 h, pH > 6.0, RIN > 6.5 Negative serology Positive toxicology for cocaine and metabolites (blood and brain) at the time of death Smoking history and nicotine and cotinine measurements Cause of death: cocaine intoxication due to cocaine alone or cocaine in combination with alcohol
Descripción

Elig.phs001377.v1.p1.2

Tipo de datos

boolean

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [2,1]
C0079399
UMLS CUI [3,1]
C0220952
UMLS CUI [3,2]
C0009170
UMLS CUI [3,3]
C0038580
UMLS CUI [4,1]
C0580205
UMLS CUI [4,2]
C0004398
UMLS CUI [5,1]
C1304686
UMLS CUI [6,1]
C3846158
UMLS CUI [7,1]
C0205160
UMLS CUI [7,2]
C0036743
UMLS CUI [8,1]
C1446409
UMLS CUI [8,2]
C0852616
UMLS CUI [8,3]
C0009170
UMLS CUI [8,4]
C0870883
UMLS CUI [8,5]
C1301931
UMLS CUI [9,1]
C1519384
UMLS CUI [9,2]
C0202431
UMLS CUI [9,3]
C0202363
UMLS CUI [10,1]
C0007465
UMLS CUI [10,2]
C0009170
UMLS CUI [10,3]
C0728899
UMLS CUI [11,1]
C0007465
UMLS CUI [11,2]
C0009170
UMLS CUI [11,3]
C0728899
UMLS CUI [11,4]
C0001969
**Exclusion Criteria**
Descripción

Elig.phs001377.v1.p1.3

Tipo de datos

boolean

Alias
UMLS CUI [1,1]
C0680251
Positive urine toxicology for illicit drugs opiate or methamphetamine, amphetamine, MDMA, PCP CNS prescription drugs (opiates, antidepressants, antiepileptics, antipsychotics, benzodiazepines) Active seizure disorder or history of serious head trauma Gross or microscopic evidence of brain trauma or active disease (stroke or hemorrhage) Positive serology HIV History of schizophrenia or schizoaffective disorder Cause of death: opiates or polydrug intoxication (opiates, methamphetamine or other illicit or licit drugs) Manner of death: suicide, asphyxiation, drowning
Descripción

Elig.phs001377.v1.p1.4

Tipo de datos

boolean

Alias
UMLS CUI [1,1]
C0743300
UMLS CUI [1,2]
C0281875
UMLS CUI [1,3]
C0376196
UMLS CUI [1,4]
C0025611
UMLS CUI [1,5]
C0002667
UMLS CUI [1,6]
C0236729
UMLS CUI [1,7]
C0115471
UMLS CUI [1,8]
C0040615
UMLS CUI [1,9]
C0003289
UMLS CUI [1,10]
C0003299
UMLS CUI [1,11]
C0005064
UMLS CUI [2,1]
C0014544
UMLS CUI [2,2]
C0036572
UMLS CUI [2,3]
C0018674
UMLS CUI [3,1]
C1551402
UMLS CUI [3,2]
C2827068
UMLS CUI [3,3]
C0876926
UMLS CUI [3,4]
C2707252
UMLS CUI [4,1]
C0019699
UMLS CUI [5,1]
C0262926
UMLS CUI [5,2]
C0036341
UMLS CUI [5,3]
C0036337
UMLS CUI [6,1]
C0007465
UMLS CUI [6,2]
C0376196
UMLS CUI [6,3]
C0728899
UMLS CUI [6,4]
C0679272
UMLS CUI [7,1]
C3263280
UMLS CUI [7,2]
C0038661
UMLS CUI [7,3]
C0004044
UMLS CUI [7,4]
C0013142

Similar models

Eligibility Criteria

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs001377.v1.p1.1
Item
**Inclusion Criteria:Cocaine Dependent Subjects (DSM-IV)**
boolean
C0220952 (UMLS CUI [1,1])
C1512693 (UMLS CUI [1,2])
C0009170 (UMLS CUI [1,3])
C0038580 (UMLS CUI [1,4])
Elig.phs001377.v1.p1.2
Item
Age: 18 - 55 years Gender: Males and Females DSM-IV Cocaine Dependence PMI < 24 h, pH > 6.0, RIN > 6.5 Negative serology Positive toxicology for cocaine and metabolites (blood and brain) at the time of death Smoking history and nicotine and cotinine measurements Cause of death: cocaine intoxication due to cocaine alone or cocaine in combination with alcohol
boolean
C0001779 (UMLS CUI [1,1])
C0079399 (UMLS CUI [2,1])
C0220952 (UMLS CUI [3,1])
C0009170 (UMLS CUI [3,2])
C0038580 (UMLS CUI [3,3])
C0580205 (UMLS CUI [4,1])
C0004398 (UMLS CUI [4,2])
C1304686 (UMLS CUI [5,1])
C3846158 (UMLS CUI [6,1])
C0205160 (UMLS CUI [7,1])
C0036743 (UMLS CUI [7,2])
C1446409 (UMLS CUI [8,1])
C0852616 (UMLS CUI [8,2])
C0009170 (UMLS CUI [8,3])
C0870883 (UMLS CUI [8,4])
C1301931 (UMLS CUI [8,5])
C1519384 (UMLS CUI [9,1])
C0202431 (UMLS CUI [9,2])
C0202363 (UMLS CUI [9,3])
C0007465 (UMLS CUI [10,1])
C0009170 (UMLS CUI [10,2])
C0728899 (UMLS CUI [10,3])
C0007465 (UMLS CUI [11,1])
C0009170 (UMLS CUI [11,2])
C0728899 (UMLS CUI [11,3])
C0001969 (UMLS CUI [11,4])
Elig.phs001377.v1.p1.3
Item
**Exclusion Criteria**
boolean
C0680251 (UMLS CUI [1,1])
Elig.phs001377.v1.p1.4
Item
Positive urine toxicology for illicit drugs opiate or methamphetamine, amphetamine, MDMA, PCP CNS prescription drugs (opiates, antidepressants, antiepileptics, antipsychotics, benzodiazepines) Active seizure disorder or history of serious head trauma Gross or microscopic evidence of brain trauma or active disease (stroke or hemorrhage) Positive serology HIV History of schizophrenia or schizoaffective disorder Cause of death: opiates or polydrug intoxication (opiates, methamphetamine or other illicit or licit drugs) Manner of death: suicide, asphyxiation, drowning
boolean
C0743300 (UMLS CUI [1,1])
C0281875 (UMLS CUI [1,2])
C0376196 (UMLS CUI [1,3])
C0025611 (UMLS CUI [1,4])
C0002667 (UMLS CUI [1,5])
C0236729 (UMLS CUI [1,6])
C0115471 (UMLS CUI [1,7])
C0040615 (UMLS CUI [1,8])
C0003289 (UMLS CUI [1,9])
C0003299 (UMLS CUI [1,10])
C0005064 (UMLS CUI [1,11])
C0014544 (UMLS CUI [2,1])
C0036572 (UMLS CUI [2,2])
C0018674 (UMLS CUI [2,3])
C1551402 (UMLS CUI [3,1])
C2827068 (UMLS CUI [3,2])
C0876926 (UMLS CUI [3,3])
C2707252 (UMLS CUI [3,4])
C0019699 (UMLS CUI [4,1])
C0262926 (UMLS CUI [5,1])
C0036341 (UMLS CUI [5,2])
C0036337 (UMLS CUI [5,3])
C0007465 (UMLS CUI [6,1])
C0376196 (UMLS CUI [6,2])
C0728899 (UMLS CUI [6,3])
C0679272 (UMLS CUI [6,4])
C3263280 (UMLS CUI [7,1])
C0038661 (UMLS CUI [7,2])
C0004044 (UMLS CUI [7,3])
C0013142 (UMLS CUI [7,4])

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