ID

45580

Description

Principal Investigator: Sekar Kathiresan, Broad Institute, Cambridge, MA 02142, USA MeSH: Hyperlipoproteinemia Type II,Hypoalphalipoproteinemias https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000587 The NHLBI "Grand Opportunity" Exome Sequencing Project (GO-ESP), a signature project of the NHLBI Recovery Act investment, was designed to identify genetic variants in coding regions (exons) of the human genome (the "exome") that are associated with heart, lung and blood diseases. These and related diseases that are of high impact to public health and individuals from diverse racial and ethnic groups will be studied. These data may help researchers understand the causes of disease, contributing to better ways to prevent, diagnose, and treat diseases, as well as determine whether to tailor prevention and treatments to specific populations. This could lead to more effective treatments and reduce the likelihood of side effects. GO-ESP is comprised of five collaborative components: 3 cohort consortia - HeartGO, LungGO, and WHISP - and 2 sequencing centers - BroadGO and SeattleGO. In this study, we seek to identify the genetic cause of two monogenic lipid disorders-severe hypercholesterolemia and familial hypoalphalipoproteinemia. Monogenic severe hypercholesterolemia is clinically characterized by elevated total and low-density lipoprotein (LDL) cholesterol levels in plasma. Elevated LDL-cholesterol levels lead to excessive deposition of cholesterol in arterial walls, which eventually results in accelerated atherosclerosis and premature cardiovascular disease (CVD). Monogenic hypercholesterolemia has a prevalence of approximately one in 500 individuals, making it one of the most common inherited disorders. To date, mutations in the LDL receptor (LDLR) ligand-binding domains of APOB and PCSK9 have been shown to cause hypercholesterolemia. While mutations in these genes can explain a large percentage of clinically diagnosed patients, the underlying molecular determinant in a substantial fraction of patients remains unknown. Familial hypoalphalipoproteinemia (low HDL-C) is defined by an HDL-C below the age- and sex- specific 10th percentile. ABCA1, LCAT, and APOA1 are known to cause familial hypoalphalipoproteinemia. We hypothesize that: (1) additional novel genes responsible for Mendelian forms of low HDL-C exist; and (2) the causal gene and mutation(s) in each family may be discovered with exome analysis of just a few affected individuals in each pedigree.

Link

dbGaP study = phs000587

Keywords

  1. 1/24/23 1/24/23 - Simon Heim
Copyright Holder

Sekar Kathiresan, Broad Institute, Cambridge, MA 02142, USA

Uploaded on

January 24, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000587 NHLBI GO-ESP: Family Studies (Mendelian Lipid Disorders)

Eligibility Criteria

Inclusion and exclusion criteria
Description

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
Inclusion criteria for high LDL-cholesterol case: LDL-cholesterol levels above 95th percentile matched for sex and age.
Description

Inclusion criteria for high LDL-cholesterol case: LDL-cholesterol levels above 95th percentile matched for sex and age.

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0023822
UMLS CUI [1,3]
C0079399
UMLS CUI [1,4]
C1706256
UMLS CUI [1,5]
C0079399
UMLS CUI [1,6]
C1264641
Exclusion criteria were mutations in the genes APOB, LDLR, and PCSK9.
Description

Exclusion criteria were mutations in the genes APOB, LDLR, and PCSK9.

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C0026882
UMLS CUI [1,3]
C1412471
UMLS CUI [1,4]
C1366529
UMLS CUI [1,5]
C1426592
Inclusion criteria for low HDL-cholesterol case: HDL-cholesterol below the age- and sex- specific 10th percentile
Description

Inclusion criteria for low HDL-cholesterol case: HDL-cholesterol below the age- and sex- specific 10th percentile

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C0428472
UMLS CUI [1,4]
C0079399
UMLS CUI [1,5]
C0001779
UMLS CUI [1,6]
C1264641
Exclusion criteria were mutations in the genes ABCA1, LCAT, and APOA1.
Description

Exclusion criteria were mutations in the genes ABCA1, LCAT, and APOA1.

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C0026882
UMLS CUI [1,3]
C1412058
UMLS CUI [1,4]
C1416804
UMLS CUI [1,5]
C1412468

Similar models

Eligibility Criteria

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Inclusion criteria for high LDL-cholesterol case: LDL-cholesterol levels above 95th percentile matched for sex and age.
Item
Inclusion criteria for high LDL-cholesterol case: LDL-cholesterol levels above 95th percentile matched for sex and age.
boolean
C1512693 (UMLS CUI [1,1])
C0023822 (UMLS CUI [1,2])
C0079399 (UMLS CUI [1,3])
C1706256 (UMLS CUI [1,4])
C0079399 (UMLS CUI [1,5])
C1264641 (UMLS CUI [1,6])
Exclusion criteria were mutations in the genes APOB, LDLR, and PCSK9.
Item
Exclusion criteria were mutations in the genes APOB, LDLR, and PCSK9.
boolean
C0680251 (UMLS CUI [1,1])
C0026882 (UMLS CUI [1,2])
C1412471 (UMLS CUI [1,3])
C1366529 (UMLS CUI [1,4])
C1426592 (UMLS CUI [1,5])
Inclusion criteria for low HDL-cholesterol case: HDL-cholesterol below the age- and sex- specific 10th percentile
Item
Inclusion criteria for low HDL-cholesterol case: HDL-cholesterol below the age- and sex- specific 10th percentile
boolean
C1512693 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C0428472 (UMLS CUI [1,3])
C0079399 (UMLS CUI [1,4])
C0001779 (UMLS CUI [1,5])
C1264641 (UMLS CUI [1,6])
Exclusion criteria were mutations in the genes ABCA1, LCAT, and APOA1.
Item
Exclusion criteria were mutations in the genes ABCA1, LCAT, and APOA1.
boolean
C0680251 (UMLS CUI [1,1])
C0026882 (UMLS CUI [1,2])
C1412058 (UMLS CUI [1,3])
C1416804 (UMLS CUI [1,4])
C1412468 (UMLS CUI [1,5])

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