ID

45576

Beschrijving

Principal Investigator: Yuehua Zhang, Department of Pediatrics, Peking University First Hospital, Beijing, China MeSH: Alternating hemiplegia of childhood https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000660 AHC is a rare and severe neurological disorder, and characterized by episodic hemiplegia or quadriplegia attacks, accompanied by other paroxysmal symptoms of oculomotor abnormalities, dystonia, seizures and autonomic disturbances; the age of onset usually occurrs before 18 months of life. Sodium-potassium ATPase alpha3 subunit (ATP1A3) has recently been identified as a causal gene for sporadic AHC by three groups. However, there has not been any large genetic study on a Chinese cohort. In the submitted data, whole-exome sequencing of three trios and three sporadic cases in a Chinese cohort produced an average of 18.8 gigabases of raw sequence. Through our analysis pipeline including BWA mapping, GATK recalibration, variant calling and filtering, all six patients contained missense mutations in ATP1A3 which were further confirmed as *de novo* mutations. Along with validation in additional patients, this study confirmed ATP1A3 as a causal gene in Chinese AHC patients, and reported six novel mutations.

Link

dbGaP study = phs000660

Trefwoorden

  1. 24-01-23 24-01-23 - Simon Heim
Houder van rechten

Yuehua Zhang, Department of Pediatrics, Peking University First Hospital, Beijing, China

Geüploaded op

24 januari 2023

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000660 Chinese Alternating Hemiplegia of Childhood (AHC) Disease Study

Subject - Consent - Affection Status

pht003508
Beschrijving

pht003508

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Beschrijving

SUBJECT_ID

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Beschrijving

CONSENT

Datatype

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C0441833
Case - control status of the subject
Beschrijving

AFFECTION_STATUS

Datatype

text

Alias
UMLS CUI [1,1]
C3274646

Similar models

Subject - Consent - Affection Status

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht003508
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C0441833 (UMLS CUI [1,2])
Code List
Consent group as determined by DAC
CL Item
General Research Use (GRU) (1)
C0021430 (UMLS CUI [1,1])
C0242481 (UMLS CUI [1,2])
Item
Case - control status of the subject
text
C3274646 (UMLS CUI [1,1])
Code List
Case - control status of the subject
CL Item
Control (1)
C3274648 (UMLS CUI [1,1])
CL Item
Case (2)
C3274647 (UMLS CUI [1,1])

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