ID
45557
Description
Principal Investigator: MeSH: https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000710 This study provides public access to a demonstration subset of 1000 genomes sequence data in dbGaP. It is intended to be used by software developers who design, implement and validate pipelines for dbGaP data. While this project distributes only public data, it uses dbGaP security mechanisms which include a project-specific security key and a decryption password. Since the data are public, the key and password for this project will be included by SRA into public demonstration packages that permit users to test and validate the security of their computational pipelines. Note that all public users of this data will be logged under the same project and account ID. The datasets attached to this project must be restricted to 1000 Genomes data identical to the project's public FTP site.
Link
Keywords
Versions (2)
- 1/10/23 1/10/23 - Simon Heim
- 1/29/25 1/29/25 - Akane Nishihara
Copyright Holder
dbGAP
Uploaded on
January 10, 2023
DOI
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License
Creative Commons BY 4.0
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dbGaP phs000710 1000 Genomes Used for Cloud Testing
The subject consent data table contains subject IDs and consent information.
- StudyEvent: SEV1
- The subject consent data table contains subject IDs and consent information.
- The data table contains subject IDs, father and mother IDs, family IDs, and sex of subject.
- This data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table includes sex and population variables.
- This sample attributes table includes body site where sample was collected, analyte type, and tumor status.
Similar models
The subject consent data table contains subject IDs and consent information.
- StudyEvent: SEV1
- The subject consent data table contains subject IDs and consent information.
- The data table contains subject IDs, father and mother IDs, family IDs, and sex of subject.
- This data table contains mapping of study subject IDs to sample IDs. Samples are the final preps submitted for genotyping, sequencing, and/or expression data. For example, if one patient (subject ID) gave one sample, and that sample was processed differently to generate 2 sequencing runs, there would be two rows, both using the same subject ID, but having 2 unique sample IDs. The data table also includes sample use.
- This subject phenotype table includes sex and population variables.
- This sample attributes table includes body site where sample was collected, analyte type, and tumor status.