ID

45552

Description

Principal Investigator: David Schwartz, MD, University of Colorado, Denver, USA MeSH: Pulmonary Disease, Chronic Obstructive,Lung Diseases, Interstitial,Pulmonary Emphysema https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624 Chronic lung diseases represent a broad spectrum of chronic fibrosing/inflammatory lung conditions that are for the most part poorly responsive to treatment and often fatal. COPD/emphysema is the fourth leading cause of death in the United States and the incidence and rate of death from pulmonary fibrosis is increasing each year. Although progress has been made in interpretation of the clinical, radiological, and pathological features of chronic lung disorders, and progress in determining the pathobiology continues, the causes, biologic mechanisms, and therapeutic options remain obscure. Moreover, predicting individuals or populations at risk for developing any of these complex diseases, at present, is not possible. To address this challenge, we plan to create a genetic, molecular, and quantitative clinical phenotyping data warehouse with bioinformatic tools that will empower investigators to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine. The composite genetic, genomic, and epigenetic signature combined with quantitative clinical phenotypes has the potential to characterize the dynamic biological state of a complex disease and complement existing diagnostic approaches that are reliant on traditional clinical measures of disease. In the proposed project, we plan to extend the scope and impact of the NHLBI Lung Tissue Research Consortium (LTRC) biorepository by creating the Lung Genomics Research Consortium (LGRC), a comprehensive genetic, molecular, and quantitative clinical phenotyping warehouse. *Our overall hypothesis is that a genetic, molecular, and quantitative clinical phenotyping warehouse combined with a rich clinical database will enable the lung research community to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine.* We plan to pursue this hypothesis through the following aims. *Specific Aim 1: *Establish a genetic, genomic, and epigenetic molecular library to complement the existing clinical database in the LTRC. *Specific Aim 2: *Develop a quantitative clinical phenotyping platform using existing LTRC data, as well as an enhanced data set including novel quantitative CT and histology imaging analyses. *Specific Aim 3: *Establish a publicly-accessible database that would integrate the genetic, molecular, and quantitative phenotyping data with the existing clinical data in the LTRC and provide query and data exploration tools that are easily accessible to the lung research community. These discoveries will enable clinicians to- Identify individuals at risk of developing chronic lung diseases; - Diagnose these conditions earlier; - Identify novel mechanisms that cause these diseases; - Reclassify disease entities into categories more representative of molecular and cellular pathogenic mechanisms regardless of traditional disease categories; - develop personalized approaches to treatment.

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624

Keywords

  1. 1/9/23 1/9/23 - Dr. med. Lucy Kessler
Copyright Holder

David Schwartz, MD, University of Colorado, Denver, USA

Uploaded on

January 9, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000624 The Lung Genomics Research Consortium (LGRC)

Sample ID, axial distribution of emphysema, axial distribution of interstitial process, received chemotherapy for cancer, tumor status of samples, and tissue type of sample obtained from participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

pht009132
Description

pht009132

Alias
UMLS CUI [1,1]
C3846158
De-identified subject ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Sample originating tissue
Description

Tissue_Type

Data type

string

Alias
UMLS CUI [1,1]
C1292533
UMLS CUI [1,2]
C0449560
Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
Description

Axial_distribution_of_emphysema

Data type

string

Alias
UMLS CUI [1,1]
C1704711
UMLS CUI [1,2]
C0034067
Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
Description

Axial_distribution_of_interstitial_process

Data type

string

Alias
UMLS CUI [1,1]
C1704711
UMLS CUI [1,2]
C0027651
Received chemotherapy for cancer [1-Yes, 2-No]
Description

Chemotherapy_for_cancer_Ever

Data type

string

Alias
UMLS CUI [1,1]
C5205154
Tumor status of sample
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752

Similar models

Sample ID, axial distribution of emphysema, axial distribution of interstitial process, received chemotherapy for cancer, tumor status of samples, and tissue type of sample obtained from participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht009132
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
Sample originating tissue
string
C1292533 (UMLS CUI [1,1])
C0449560 (UMLS CUI [1,2])
Code List
Sample originating tissue
CL Item
Blood (1)
C0005834 (UMLS CUI [1,1])
CL Item
Lung-LI (2)
C0024109 (UMLS CUI [1,1])
CL Item
Lung-LL (3)
C0024109 (UMLS CUI [1,1])
CL Item
Lung-LU (4)
C0024109 (UMLS CUI [1,1])
CL Item
Lung-RL (5)
C0024109 (UMLS CUI [1,1])
CL Item
Lung-RM (6)
C0024109 (UMLS CUI [1,1])
CL Item
Lung-RU (7)
C0024109 (UMLS CUI [1,1])
Item
Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
string
C1704711 (UMLS CUI [1,1])
C0034067 (UMLS CUI [1,2])
Code List
Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
CL Item
None (1)
C0549184 (UMLS CUI [1,1])
CL Item
Peripheral/subpleural (2)
C0205100 (UMLS CUI [1,1])
CL Item
Central/axial (3)
C0205099 (UMLS CUI [1,1])
CL Item
Evenly distributed (4)
C3846158 (UMLS CUI [1,1])
Item
Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
string
C1704711 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
Code List
Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
CL Item
None (1)
C0549184 (UMLS CUI [1,1])
CL Item
Peripheral/subpleural (2)
C0205100 (UMLS CUI [1,1])
CL Item
Central/axial (3)
C0205099 (UMLS CUI[1,1])
CL Item
Evenly distributed (4)
C3846158 (UMLS CUI [1,1])
Item
Received chemotherapy for cancer [1-Yes, 2-No]
string
C5205154 (UMLS CUI [1,1])
Code List
Received chemotherapy for cancer [1-Yes, 2-No]
CL Item
Yes (1)
C1705108 (UMLS CUI [1,1])
CL Item
No (2)
C1298908 (UMLS CUI [1,1])
Item
Tumor status of sample
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status of sample
CL Item
Not a tumor (2)
C2347026 (UMLS CUI [1,1])
C0027651 (UMLS CUI [1,2])
C1518422 (UMLS CUI [1,3])

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