0 Ratings

ID

45552

Description

Principal Investigator: David Schwartz, MD, University of Colorado, Denver, USA MeSH: Pulmonary Disease, Chronic Obstructive,Lung Diseases, Interstitial,Pulmonary Emphysema https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624 Chronic lung diseases represent a broad spectrum of chronic fibrosing/inflammatory lung conditions that are for the most part poorly responsive to treatment and often fatal. COPD/emphysema is the fourth leading cause of death in the United States and the incidence and rate of death from pulmonary fibrosis is increasing each year. Although progress has been made in interpretation of the clinical, radiological, and pathological features of chronic lung disorders, and progress in determining the pathobiology continues, the causes, biologic mechanisms, and therapeutic options remain obscure. Moreover, predicting individuals or populations at risk for developing any of these complex diseases, at present, is not possible. To address this challenge, we plan to create a genetic, molecular, and quantitative clinical phenotyping data warehouse with bioinformatic tools that will empower investigators to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine. The composite genetic, genomic, and epigenetic signature combined with quantitative clinical phenotypes has the potential to characterize the dynamic biological state of a complex disease and complement existing diagnostic approaches that are reliant on traditional clinical measures of disease. In the proposed project, we plan to extend the scope and impact of the NHLBI Lung Tissue Research Consortium (LTRC) biorepository by creating the Lung Genomics Research Consortium (LGRC), a comprehensive genetic, molecular, and quantitative clinical phenotyping warehouse. *Our overall hypothesis is that a genetic, molecular, and quantitative clinical phenotyping warehouse combined with a rich clinical database will enable the lung research community to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine.* We plan to pursue this hypothesis through the following aims. *Specific Aim 1: *Establish a genetic, genomic, and epigenetic molecular library to complement the existing clinical database in the LTRC. *Specific Aim 2: *Develop a quantitative clinical phenotyping platform using existing LTRC data, as well as an enhanced data set including novel quantitative CT and histology imaging analyses. *Specific Aim 3: *Establish a publicly-accessible database that would integrate the genetic, molecular, and quantitative phenotyping data with the existing clinical data in the LTRC and provide query and data exploration tools that are easily accessible to the lung research community. These discoveries will enable clinicians to- Identify individuals at risk of developing chronic lung diseases; - Diagnose these conditions earlier; - Identify novel mechanisms that cause these diseases; - Reclassify disease entities into categories more representative of molecular and cellular pathogenic mechanisms regardless of traditional disease categories; - develop personalized approaches to treatment.

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624

Keywords

  1. 1/9/23 1/9/23 - Dr. med. Lucy Kessler
Copyright Holder

David Schwartz, MD, University of Colorado, Denver, USA

Uploaded on

January 9, 2023

DOI

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License

Creative Commons BY 4.0

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    dbGaP phs000624 The Lung Genomics Research Consortium (LGRC)

    Sample ID, axial distribution of emphysema, axial distribution of interstitial process, received chemotherapy for cancer, tumor status of samples, and tissue type of sample obtained from participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

    pht009132
    Description

    pht009132

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified subject ID
    Description

    SAMPLE_ID

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C2348585
    Sample originating tissue
    Description

    Tissue_Type

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1292533
    UMLS CUI [1,2]
    C0449560
    Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    Description

    Axial_distribution_of_emphysema

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1704711
    UMLS CUI [1,2]
    C0034067
    Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    Description

    Axial_distribution_of_interstitial_process

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C1704711
    UMLS CUI [1,2]
    C0027651
    Received chemotherapy for cancer [1-Yes, 2-No]
    Description

    Chemotherapy_for_cancer_Ever

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C5205154
    Tumor status of sample
    Description

    IS_TUMOR

    Data type

    text

    Alias
    UMLS CUI [1,1]
    C0475752

    Similar models

    Sample ID, axial distribution of emphysema, axial distribution of interstitial process, received chemotherapy for cancer, tumor status of samples, and tissue type of sample obtained from participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    pht009132
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified subject ID
    string
    C4684638 (UMLS CUI [1,1])
    C2348585 (UMLS CUI [1,2])
    Item
    Sample originating tissue
    string
    C1292533 (UMLS CUI [1,1])
    C0449560 (UMLS CUI [1,2])
    Code List
    Sample originating tissue
    CL Item
    Blood (1)
    C0005834 (UMLS CUI [1,1])
    CL Item
    Lung-LI (2)
    C0024109 (UMLS CUI [1,1])
    CL Item
    Lung-LL (3)
    C0024109 (UMLS CUI [1,1])
    CL Item
    Lung-LU (4)
    C0024109 (UMLS CUI [1,1])
    CL Item
    Lung-RL (5)
    C0024109 (UMLS CUI [1,1])
    CL Item
    Lung-RM (6)
    C0024109 (UMLS CUI [1,1])
    CL Item
    Lung-RU (7)
    C0024109 (UMLS CUI [1,1])
    Item
    Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    string
    C1704711 (UMLS CUI [1,1])
    C0034067 (UMLS CUI [1,2])
    Code List
    Axial distribution of emphysema [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    CL Item
    None (1)
    C0549184 (UMLS CUI [1,1])
    CL Item
    Peripheral/subpleural (2)
    C0205100 (UMLS CUI [1,1])
    CL Item
    Central/axial (3)
    C0205099 (UMLS CUI [1,1])
    CL Item
    Evenly distributed (4)
    C3846158 (UMLS CUI [1,1])
    Item
    Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    string
    C1704711 (UMLS CUI [1,1])
    C0027651 (UMLS CUI [1,2])
    Code List
    Axial distribution of interstitial process [1-None, 2-Peripheral/Subpleural, 3-Central/Axial, 4-Evenly distributed]
    CL Item
    None (1)
    C0549184 (UMLS CUI [1,1])
    CL Item
    Peripheral/subpleural (2)
    C0205100 (UMLS CUI [1,1])
    CL Item
    Central/axial (3)
    C0205099 (UMLS CUI[1,1])
    CL Item
    Evenly distributed (4)
    C3846158 (UMLS CUI [1,1])
    Item
    Received chemotherapy for cancer [1-Yes, 2-No]
    string
    C5205154 (UMLS CUI [1,1])
    Code List
    Received chemotherapy for cancer [1-Yes, 2-No]
    CL Item
    Yes (1)
    C1705108 (UMLS CUI [1,1])
    CL Item
    No (2)
    C1298908 (UMLS CUI [1,1])
    Item
    Tumor status of sample
    text
    C0475752 (UMLS CUI [1,1])
    Code List
    Tumor status of sample
    CL Item
    Not a tumor (2)
    C2347026 (UMLS CUI [1,1])
    C0027651 (UMLS CUI [1,2])
    C1518422 (UMLS CUI [1,3])

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