ID

45552

Descrição

Principal Investigator: David Schwartz, MD, University of Colorado, Denver, USA MeSH: Pulmonary Disease, Chronic Obstructive,Lung Diseases, Interstitial,Pulmonary Emphysema https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624 Chronic lung diseases represent a broad spectrum of chronic fibrosing/inflammatory lung conditions that are for the most part poorly responsive to treatment and often fatal. COPD/emphysema is the fourth leading cause of death in the United States and the incidence and rate of death from pulmonary fibrosis is increasing each year. Although progress has been made in interpretation of the clinical, radiological, and pathological features of chronic lung disorders, and progress in determining the pathobiology continues, the causes, biologic mechanisms, and therapeutic options remain obscure. Moreover, predicting individuals or populations at risk for developing any of these complex diseases, at present, is not possible. To address this challenge, we plan to create a genetic, molecular, and quantitative clinical phenotyping data warehouse with bioinformatic tools that will empower investigators to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine. The composite genetic, genomic, and epigenetic signature combined with quantitative clinical phenotypes has the potential to characterize the dynamic biological state of a complex disease and complement existing diagnostic approaches that are reliant on traditional clinical measures of disease. In the proposed project, we plan to extend the scope and impact of the NHLBI Lung Tissue Research Consortium (LTRC) biorepository by creating the Lung Genomics Research Consortium (LGRC), a comprehensive genetic, molecular, and quantitative clinical phenotyping warehouse. *Our overall hypothesis is that a genetic, molecular, and quantitative clinical phenotyping warehouse combined with a rich clinical database will enable the lung research community to make fundamental discoveries in disease pathogenesis, refine diagnostic criteria, and lead to real gains in personalized medicine.* We plan to pursue this hypothesis through the following aims. *Specific Aim 1: *Establish a genetic, genomic, and epigenetic molecular library to complement the existing clinical database in the LTRC. *Specific Aim 2: *Develop a quantitative clinical phenotyping platform using existing LTRC data, as well as an enhanced data set including novel quantitative CT and histology imaging analyses. *Specific Aim 3: *Establish a publicly-accessible database that would integrate the genetic, molecular, and quantitative phenotyping data with the existing clinical data in the LTRC and provide query and data exploration tools that are easily accessible to the lung research community. These discoveries will enable clinicians to- Identify individuals at risk of developing chronic lung diseases; - Diagnose these conditions earlier; - Identify novel mechanisms that cause these diseases; - Reclassify disease entities into categories more representative of molecular and cellular pathogenic mechanisms regardless of traditional disease categories; - develop personalized approaches to treatment.

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000624

Palavras-chave

  1. 09/01/2023 09/01/2023 - Dr. med. Lucy Kessler
Titular dos direitos

David Schwartz, MD, University of Colorado, Denver, USA

Transferido a

9 de janeiro de 2023

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000624 The Lung Genomics Research Consortium (LGRC)

Subject ID, age, gender, craniocaudal distribution of interstitial process, FEV1, first degree blood relatives developed asthma, COPD, or emphysema, major clinical diagnosis, pathological major diagnosis, severity classification, spirometric classification of COPD, and cigarette smoking of participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

pht009131
Descrição

pht009131

Alias
UMLS CUI [1,1]
C3846158 (Other Coding)
LOINC
LA4728-7
De-identified subject ID
Descrição

SUBJECT_ID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4684638 (De-identified Information)
UMLS CUI [1,2]
C2348585 (Clinical Trial Subject Unique Identifier)
Gender of participant [1=Male, 2=Female]
Descrição

Gender

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0079399 (Gender)
SNOMED
263495000
LOINC
LP61312-2
Subject age
Descrição

Age

Tipo de dados

text

Unidades de medida
  • Years
Alias
UMLS CUI [1,1]
C0001779 (Age)
SNOMED
424144002
LOINC
LP28815-6
Years
Smoking history [1-Current, 2-Ever (>100), 3-Never]
Descrição

Cigarette_smoking

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1519384 (Tobacco Smoking History)
Craniocaudal distribution of interstitial process
Descrição

Craniocaudal_distribution_of_interstitial_process

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0027651 (Neoplasms)
SNOMED
108369006
UMLS CUI [1,2]
C0442215 (Cranio-caudal projection)
SNOMED
399162004
FEV1_Pre_Bronchodilator_predicted_Categorical [1->=80%, 2-50-80%, 3-30-50%, 4-<30%]
Descrição

FEV1_Pre_Bronchodilator_predicted_Categorical

Tipo de dados

text

Alias
UMLS CUI [1,1]
C4027878 (pulmonary function FEV1)
First degree blood relatives developed asthma [1-Yes, 2-No, 3-Unknown]
Descrição

First_degree_blood_relatives_developed_Asthma

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1261327 (Family history of asthma)
SNOMED
160377001
First degree blood relatives developed COPD [1-Yes, 2-No, 3-Unknown]
Descrição

First_degree_blood_relatives_developed_COPD

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0024117 (Chronic Obstructive Airway Disease)
SNOMED
13645005
LOINC
LP57616-2
UMLS CUI [1,2]
C0241889 (Family history (finding))
SNOMED
416471007
First degree blood relatives developed emphysema [1-Yes, 2-No, 3-Unknown]
Descrição

First_degree_blood_relatives_developed_Emphysema

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0034067 (Pulmonary Emphysema)
SNOMED
87433001
LOINC
LA10561-1
UMLS CUI [1,2]
C0241889 (Family history (finding))
SNOMED
416471007
Have you ever lived in a household in which people smoked
Descrição

Have_you_ever_lived_in_a_household_in_which_people_smoked

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0037370 (Smoking, Passive)
Final major clinical diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control]
Descrição

Major_Diagnosis_Final_Clinical

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0011900 (Diagnosis)
SNOMED
439401001
LOINC
LP30831-9
Final pathological major diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control, 4-Other Lung]
Descrição

Major_Diagnosis_Final_Pathological

Tipo de dados

text

Alias
UMLS CUI [1,1]
C4699474 (Pathological findings)
LOINC
LA29195-7
Severity classification [1-Advanced Disease (DLCO < 40%), 2-Limited Disease (DLCO >= 40%),
Descrição

Severity_classification_of_DLCO_abnormality_Categorical

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0521117 (Severity of illness)
Spirometric classification of COPD [0-At Risk, 1-Mild COPD, 2-Moderate COPD, 3-Severe COPD, 4-Very Severe COPD]
Descrição

Spirometric_classification_of_COPD_Post_Only

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0037981 (Spirometry)
SNOMED
127783003
LOINC
LP6527-8
UMLS CUI [1,2]
C0008902 (Classification)
SNOMED
73504009
UMLS CUI [1,3]
C0024117 (Chronic Obstructive Airway Disease)
SNOMED
13645005
LOINC
LP57616-2

Similar models

Subject ID, age, gender, craniocaudal distribution of interstitial process, FEV1, first degree blood relatives developed asthma, COPD, or emphysema, major clinical diagnosis, pathological major diagnosis, severity classification, spirometric classification of COPD, and cigarette smoking of participants with or without lung disease and involved in the "The Lung Genomics Research Consortium (LGRC)" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht009131
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
Item
Gender of participant [1=Male, 2=Female]
string
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant [1=Male, 2=Female]
CL Item
Male (1)
C0086582 (UMLS CUI [1,1])
CL Item
Female (2)
C0086287 (UMLS CUI [1,1])
Age
Item
Subject age
text
C0001779 (UMLS CUI [1,1])
Item
Smoking history [1-Current, 2-Ever (>100), 3-Never]
text
C1519384 (UMLS CUI [1,1])
Code List
Smoking history [1-Current, 2-Ever (>100), 3-Never]
CL Item
Current (1)
C3241966 (UMLS CUI [1,1])
CL Item
Ever (>100) (2)
C3475470 (UMLS CUI [1,1])
CL Item
Never (3)
C0337672 (UMLS CUI [1,1])
Craniocaudal_distribution_of_interstitial_process
Item
Craniocaudal distribution of interstitial process
text
C0027651 (UMLS CUI [1,1])
C0442215 (UMLS CUI [1,2])
Item
FEV1_Pre_Bronchodilator_predicted_Categorical [1->=80%, 2-50-80%, 3-30-50%, 4-<30%]
text
C4027878 (UMLS CUI [1,1])
Code List
FEV1_Pre_Bronchodilator_predicted_Categorical [1->=80%, 2-50-80%, 3-30-50%, 4-<30%]
CL Item
80% or more (1)
C4027878 (UMLS CUI [1,1])
CL Item
50-80% (2)
C4027878 (UMLS CUI [1,1])
CL Item
30-50% (3)
C4027878 (UMLS CUI [1,1])
CL Item
<30% (4)
C4027878 (UMLS CUI [1,1])
Item
First degree blood relatives developed asthma [1-Yes, 2-No, 3-Unknown]
text
C1261327 (UMLS CUI [1,1])
Code List
First degree blood relatives developed asthma [1-Yes, 2-No, 3-Unknown]
CL Item
Yes (1)
C1705108 (UMLS CUI [1,1])
CL Item
No (2)
C1298908 (UMLS CUI [1,1])
CL Item
Unknown (3)
C0439673 (UMLS CUI [1,1])
Item
First degree blood relatives developed COPD [1-Yes, 2-No, 3-Unknown]
text
C0024117 (UMLS CUI [1,1])
C0241889 (UMLS CUI [1,2])
Code List
First degree blood relatives developed COPD [1-Yes, 2-No, 3-Unknown]
CL Item
Yes (1)
C1705108 (UMLS CUI [1,1])
CL Item
No (2)
C1298908 (UMLS CUI [1,1])
CL Item
Unknown (3)
C0439673 (UMLS CUI [1,1])
Item
First degree blood relatives developed emphysema [1-Yes, 2-No, 3-Unknown]
text
C0034067 (UMLS CUI [1,1])
C0241889 (UMLS CUI [1,2])
Code List
First degree blood relatives developed emphysema [1-Yes, 2-No, 3-Unknown]
CL Item
Yes (1)
C1705108 (UMLS CUI [1,1])
CL Item
No (2)
C1298908 (UMLS CUI [1,1])
CL Item
Unknown (3)
C0439673 (UMLS CUI [1,1])
Item
Have you ever lived in a household in which people smoked
text
C0037370 (UMLS CUI [1,1])
Code List
Have you ever lived in a household in which people smoked
CL Item
Yes (1)
C1705108 (UMLS CUI [1,1])
CL Item
No (2)
C1298908 (UMLS CUI [1,1])
CL Item
Unknown (3)
C0439673 (UMLS CUI [1,1])
Item
Final major clinical diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control]
text
C0011900 (UMLS CUI [1,1])
Code List
Final major clinical diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control]
CL Item
ILD (1)
C0206062 (UMLS CUI [1,1])
CL Item
COPD/Emphysema (2)
C0024117 (UMLS CUI [1,1])
CL Item
Control (3)
C3274648 (UMLS CUI [1,1])
Item
Final pathological major diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control, 4-Other Lung]
text
C4699474 (UMLS CUI [1,1])
Code List
Final pathological major diagnosis [1-ILD, 2-COPD/Emphysema, 3-Control, 4-Other Lung]
CL Item
ILD (1)
CL Item
COPD/Emphysema (2)
C0024117 (UMLS CUI [1,1])
CL Item
Control (3)
C3274648 (UMLS CUI [1,1])
CL Item
Other lung (4)
C0024115 (UMLS CUI [1,1])
C0205394 (UMLS CUI [1,2])
Item
Severity classification [1-Advanced Disease (DLCO < 40%), 2-Limited Disease (DLCO >= 40%),
text
C0521117 (UMLS CUI [1,1])
Code List
Severity classification [1-Advanced Disease (DLCO < 40%), 2-Limited Disease (DLCO >= 40%),
CL Item
Advanced Disease (DLCO < 40%) (1)
C0679246 (UMLS CUI [1,1])
CL Item
Limited Disease (DLCO >= 40%) (2)
C4740690 (UMLS CUI [1,1])
Item
Spirometric classification of COPD [0-At Risk, 1-Mild COPD, 2-Moderate COPD, 3-Severe COPD, 4-Very Severe COPD]
text
C0037981 (UMLS CUI [1,1])
C0008902 (UMLS CUI [1,2])
C0024117 (UMLS CUI [1,3])
Code List
Spirometric classification of COPD [0-At Risk, 1-Mild COPD, 2-Moderate COPD, 3-Severe COPD, 4-Very Severe COPD]
CL Item
At risk (0)
C1444641 (UMLS CUI [1,1])
CL Item
Mild COPD (1)
C2945599 (UMLS CUI [1,1])
CL Item
Moderate COPD (2)
C0205081 (UMLS CUI [1,1])
CL Item
Severe COPD (3)
C0205082 (UMLS CUI [1,1])
CL Item
Very severe COPD (4)
C3641272 (UMLS CUI [1,1])

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