ID

45546

Description

Principal Investigator: Yick Fu Wong, Department of Obstetrics and Gynaecology, The Chinese University of Hong Kong, Hong Kong Department of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA MeSH: Uterine Cervical Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000723 Precision mapping of genetic alterations in cancer can enable better selection of therapies and improved outcomes when combined with new sequencing diagnostics. We describe whole-exome sequences from cervical adenocarcinomas and paired normal samples in Hong Kong Chinese women. These data uncover a heterogeneous genomic landscape but identify commonly aberrant loci including FAT1, ARID1A, ERBB2 and PIK3CA that may provide a focus for the development of individualized targeted therapies for Chinese women with cervical adenocarcinoma.

Link

dbGaP-study=phs000723

Keywords

  1. 1/6/23 1/6/23 - Chiara Middel
Copyright Holder

Yick Fu Wong, Department of Obstetrics and Gynaecology, The Chinese University of Hong Kong, Hong Kong Department of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA

Uploaded on

January 6, 2023

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000723 Sequencing of Cervical Cancer

Sample ID, body site, analyte type, tumor status of samples, histological type, primary metastatic tumor, primary tumor location, tumor stage, tumor grade, tumor treatment, genotyping center, and sequencing center of participants with or without cervical cancer and involved in the "Sequencing of Cervical Cancer" project.

pht005213
Description

pht005213

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte type
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

Collected in Exam 1

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Primary tumor, metastasis, or transformed cell line
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [2,1]
C0027627
UMLS CUI [3,1]
C0007601
Primary tumor location
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C0475447
Tumor stage of sample
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C1300072
UMLS CUI [1,2]
C0370003
Tumor grade of sample
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C0919553
UMLS CUI [1,2]
C0370003
Type of tumor treatment for sample
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0087111
UMLS CUI [1,3]
C0370003
Genotyping center
Description

Collected in Exam 1

Data type

text

Alias
UMLS CUI [1,1]
C1285573
UMLS CUI [1,2]
C0565990
Name of the center which conducted sequencing
Description

Collected in Exam 1

Data type

string

Alias
UMLS CUI [1,1]
C1301943
UMLS CUI [1,2]
C0565990
UMLS CUI [1,3]
C1561491

Similar models

Sample ID, body site, analyte type, tumor status of samples, histological type, primary metastatic tumor, primary tumor location, tumor stage, tumor grade, tumor treatment, genotyping center, and sequencing center of participants with or without cervical cancer and involved in the "Sequencing of Cervical Cancer" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht005213
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (Y)
C0027651 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [2,1])
C0007601 (UMLS CUI [3,1])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0475447 (UMLS CUI [1,1])
TUMOR_STAGE
Item
Tumor stage of sample
string
C1300072 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
TUMOR_GRADE
Item
Tumor grade of sample
string
C0919553 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
TUMOR_TREATMENT
Item
Type of tumor treatment for sample
string
C0332307 (UMLS CUI [1,1])
C0087111 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
GENOTYPING_CENTER
Item
Genotyping center
text
C1285573 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
SEQUENCING_CENTER
Item
Name of the center which conducted sequencing
string
C1301943 (UMLS CUI [1,1])
C0565990 (UMLS CUI [1,2])
C1561491 (UMLS CUI [1,3])

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