ID

45537

Descrição

Principal Investigator: Bradley Bernstein, MD, PhD, Massachusetts General Hospital, Boston, MA, USA, Broad Institute, Cambridge, MA, USA MeSH: Nervous System Diseases https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000700 For the NIH Roadmap Epigenomics project, we applied ChlP-Seq, HTBS and WGBS pipelines to generate comprehensive high-resolution maps of chromatin state and DNA methylation for 100 diverse cell types. Cell types were selected for their biological and medical importance, and for their potential to maximize the comprehensiveness of acquired epigenomic data. They include human ES cells, ES-derived cells, mesenchymal stem cells, reprogrammed stem cells and primary tissues. Comprehensive characterization of epigenetic marks ("the epigenome") is a critical step towards a global understanding of the human genome in health and disease. In this study we provide unprecedented views of the human epigenetic landscape and its variation across cell states, which offer fundamental insight into the functions and interrelationships of epigenetic marks, and provide a framework for future studies of normal and diseased epigenomes. *The Roadmap Epigenomics Broad cohort is utilized in the following dbGaP sub-study.* To view molecular data and derived variables collected in this sub-study, please click on the following sub-study below or in the "Sub-studies" box located on the right hand side of this top-level study page phs000700 the Roadmap Epigenomics Broad cohort.- phs000610 RM_Epigenomics_Broad_Alz

Link

dbGaP study = phs000700

Palavras-chave

  1. 29/12/2022 29/12/2022 - Simon Heim
Titular dos direitos

Bradley Bernstein, MD, PhD, Massachusetts General Hospital, Boston, MA, USA, Broad Institute, Cambridge, MA, USA

Transferido a

29 de dezembro de 2022

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000700 RoadmapEpigenomics_Broad

Subject ID, sample ID, sample source, source sample ID, sample use, and study of participants with Alzheimer disease and involved in the "NIH Roadmap Epigenomics Program - Broad Institute" project.

pht003649
Descrição

pht003649

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descrição

SUBJECT_ID

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Descrição

SAMPLE_ID

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1299222
Source repository where samples originate
Descrição

SAMPLE_SOURCE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3847505
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C2347026
Sample ID used in the Source Repository
Descrição

SOURCE_SAMPLE_ID

Tipo de dados

text

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C3847505
UMLS CUI [1,3]
C0449416
Sample Use
Descrição

SAMPLE_USE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C1524063
Study ID
Descrição

STUDY

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2826693

Similar models

Subject ID, sample ID, sample source, source sample ID, sample use, and study of participants with Alzheimer disease and involved in the "NIH Roadmap Epigenomics Program - Broad Institute" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht003649
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
text
C2348585 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
text
C1299222 (UMLS CUI [1,1])
SAMPLE_SOURCE
Item
Source repository where samples originate
string
C3847505 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C2347026 (UMLS CUI [1,3])
SOURCE_SAMPLE_ID
Item
Sample ID used in the Source Repository
text
C1299222 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
SAMPLE_USE
Item
Sample Use
text
C2347026 (UMLS CUI [1,1])
C1524063 (UMLS CUI [1,2])
STUDY
Item
Study ID
text
C2826693 (UMLS CUI [1,1])

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