ID

45537

Descrizione

Principal Investigator: Bradley Bernstein, MD, PhD, Massachusetts General Hospital, Boston, MA, USA, Broad Institute, Cambridge, MA, USA MeSH: Nervous System Diseases https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000700 For the NIH Roadmap Epigenomics project, we applied ChlP-Seq, HTBS and WGBS pipelines to generate comprehensive high-resolution maps of chromatin state and DNA methylation for 100 diverse cell types. Cell types were selected for their biological and medical importance, and for their potential to maximize the comprehensiveness of acquired epigenomic data. They include human ES cells, ES-derived cells, mesenchymal stem cells, reprogrammed stem cells and primary tissues. Comprehensive characterization of epigenetic marks ("the epigenome") is a critical step towards a global understanding of the human genome in health and disease. In this study we provide unprecedented views of the human epigenetic landscape and its variation across cell states, which offer fundamental insight into the functions and interrelationships of epigenetic marks, and provide a framework for future studies of normal and diseased epigenomes. *The Roadmap Epigenomics Broad cohort is utilized in the following dbGaP sub-study.* To view molecular data and derived variables collected in this sub-study, please click on the following sub-study below or in the "Sub-studies" box located on the right hand side of this top-level study page phs000700 the Roadmap Epigenomics Broad cohort.- phs000610 RM_Epigenomics_Broad_Alz

collegamento

dbGaP study = phs000700

Keywords

  1. 29/12/22 29/12/22 - Simon Heim
Titolare del copyright

Bradley Bernstein, MD, PhD, Massachusetts General Hospital, Boston, MA, USA, Broad Institute, Cambridge, MA, USA

Caricato su

29 dicembre 2022

DOI

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Licenza

Creative Commons BY 4.0

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dbGaP phs000700 RoadmapEpigenomics_Broad

Subject ID, subject source, source subject ID, and consent group of participants with Alzheimer disease and involved in the "NIH Roadmap Epigenomics Program - Broad Institute" project.

pht003648
Descrizione

pht003648

Alias
UMLS CUI [1,1]
C3846158
Consent group as determined by DAC
Descrizione

CONSENT

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C0441833
Subject ID
Descrizione

SUBJECT_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2348585
Source repository where subjects originate
Descrizione

SUBJECT_SOURCE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C3847505
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0681850
Subject ID used in the Source Repository
Descrizione

SOURCE_SUBJECT_ID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C3847505
UMLS CUI [1,3]
C0449416

Similar models

Subject ID, subject source, source subject ID, and consent group of participants with Alzheimer disease and involved in the "NIH Roadmap Epigenomics Program - Broad Institute" project.

Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht003648
C3846158 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C0441833 (UMLS CUI [1,2])
Code List
Consent group as determined by DAC
CL Item
Alzheimer's and age related conditions (AARC) (2)
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SUBJECT_SOURCE
Item
Source repository where subjects originate
string
C3847505 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0681850 (UMLS CUI [1,3])
SOURCE_SUBJECT_ID
Item
Subject ID used in the Source Repository
string
C2348585 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])

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