ID

45531

Beschrijving

Principal Investigator: Bryan J. Traynor, PhD, M.D, National Institutes of Health, Bethesda, MD, USA MeSH: Myasthenia gravis https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000726 The purpose of this project was to conduct a genome-wide associate study to search for the genetic factors that predispose to myasthenia gravis. The rationale for this study lies in the fact that, although the immunological and physiological processes affecting the neuromuscular junctions of myasthenia gravis patients are well understood, the spectrum of genetic factors that predispose to myasthenia gravis and influence its disease manifestations are not well known. Identification of the myasthenia gravis-related genes will shed light on the fundamental cellular events underlying myasthenia gravis, and will provide focus for research aimed at developing therapies that alter the natural course of the disease. A consortium of fourteen institutions in North America collected DNA samples from 1028 people diagnosed with autoimmune myasthenia gravis. Relevant clinical data have been collected for each patient, including age of onset, severity of disease, response to drug therapy, personal and family history of other autoimmune diseases. Genotyping of the case cohort was performed in the Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, MD. Genotyping of the case cohort was performed using the HumanOmniExpress-12v1_C SNP array manufactured by Illumina Inc. For the control cohort, we downloaded genotype data from dbGAP (accession phs000196.v2.p1) for 1,998 US neurologically normal individuals. The control cohort had been previously genotyped at the Center for Inherited Disease Research at Johns Hopkins University on HumanOmni1-Quad version 1.0B beadchips (Illumina) as part of the NeuroGenetics Research Consortium GWAS of Parkinson's disease. Analyses were confined to the 677,673 autosomal SNPs that were common to both chips. Of the 1028 samples which were genotyped, 21 samples were excluded due to mismatched genders, 9 were excluded due to low genotype call rate, 5 samples were excluded as duplicates, and 25 samples were excluded as ethnic outliers. The remaining 972 samples were used in analysis.

Link

dbGaP study = phs000726

Trefwoorden

  1. 28-12-22 28-12-22 - Simon Heim
Houder van rechten

Bryan J. Traynor, PhD, M.D, National Institutes of Health, Bethesda, MD, USA

Geüploaded op

28 december 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000726 Genome-wide Association Study of Myasthenia Gravis

The dataset provides information of the diagnosis (Myasthenia Gravis), degree of severity observed, and basic sociodemographic information.

pht003779
Beschrijving

pht003779

Alias
UMLS CUI [1,1]
C3846158
De-identified Subject ID
Beschrijving

SUBJECT_ID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Race of participant
Beschrijving

RACE

Datatype

string

Alias
UMLS CUI [1,1]
C0034510
Disease onset age
Beschrijving

AGE_ONSET

Datatype

text

Maateenheden
  • Years
Alias
UMLS CUI [1,1]
C0206132
Years
Gender of participant
Beschrijving

GENDER

Datatype

text

Alias
UMLS CUI [1,1]
C0079399
Worst disease outcome of participant
Beschrijving

WORST_STATUS

Datatype

text

Alias
UMLS CUI [1,1]
C1522166
UMLS CUI [1,2]
C0679250
UMLS CUI [1,3]
C4554048
Diagnosis of participant
Beschrijving

DIAGNOSIS

Datatype

string

Alias
UMLS CUI [1,1]
C0011900
UMLS CUI [1,2]
C4554048

Similar models

The dataset provides information of the diagnosis (Myasthenia Gravis), degree of severity observed, and basic sociodemographic information.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht003779
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
De-identified Subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
RACE
Item
Race of participant
string
C0034510 (UMLS CUI [1,1])
AGE_ONSET
Item
Disease onset age
text
C0206132 (UMLS CUI [1,1])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Female (F)
C0086287 (UMLS CUI [1,1])
CL Item
Male (M)
C0086582 (UMLS CUI [1,1])
CL Item
Not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Unknown (UNK)
Item
Worst disease outcome of participant
text
C1522166 (UMLS CUI [1,1])
C0679250 (UMLS CUI [1,2])
C4554048 (UMLS CUI [1,3])
Code List
Worst disease outcome of participant
CL Item
Diplopia or ptosis only (0)
CL Item
Mild limb weakness (1)
CL Item
Dysphagia and/or dyspnea (2)
CL Item
Severe limb weakness (3)
CL Item
Hospitalized (4)
CL Item
Ventilated (5)
CL Item
Feeding tube (6)
DIAGNOSIS
Item
Diagnosis of participant
string
C0011900 (UMLS CUI [1,1])
C4554048 (UMLS CUI [1,2])

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