ID

45531

Descripción

Principal Investigator: Bryan J. Traynor, PhD, M.D, National Institutes of Health, Bethesda, MD, USA MeSH: Myasthenia gravis https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000726 The purpose of this project was to conduct a genome-wide associate study to search for the genetic factors that predispose to myasthenia gravis. The rationale for this study lies in the fact that, although the immunological and physiological processes affecting the neuromuscular junctions of myasthenia gravis patients are well understood, the spectrum of genetic factors that predispose to myasthenia gravis and influence its disease manifestations are not well known. Identification of the myasthenia gravis-related genes will shed light on the fundamental cellular events underlying myasthenia gravis, and will provide focus for research aimed at developing therapies that alter the natural course of the disease. A consortium of fourteen institutions in North America collected DNA samples from 1028 people diagnosed with autoimmune myasthenia gravis. Relevant clinical data have been collected for each patient, including age of onset, severity of disease, response to drug therapy, personal and family history of other autoimmune diseases. Genotyping of the case cohort was performed in the Laboratory of Neurogenetics, National Institute on Aging, National Institutes of Health, Bethesda, MD. Genotyping of the case cohort was performed using the HumanOmniExpress-12v1_C SNP array manufactured by Illumina Inc. For the control cohort, we downloaded genotype data from dbGAP (accession phs000196.v2.p1) for 1,998 US neurologically normal individuals. The control cohort had been previously genotyped at the Center for Inherited Disease Research at Johns Hopkins University on HumanOmni1-Quad version 1.0B beadchips (Illumina) as part of the NeuroGenetics Research Consortium GWAS of Parkinson's disease. Analyses were confined to the 677,673 autosomal SNPs that were common to both chips. Of the 1028 samples which were genotyped, 21 samples were excluded due to mismatched genders, 9 were excluded due to low genotype call rate, 5 samples were excluded as duplicates, and 25 samples were excluded as ethnic outliers. The remaining 972 samples were used in analysis.

Link

dbGaP study = phs000726

Palabras clave

  1. 28/12/22 28/12/22 - Simon Heim
Titular de derechos de autor

Bryan J. Traynor, PhD, M.D, National Institutes of Health, Bethesda, MD, USA

Subido en

28 de diciembre de 2022

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs000726 Genome-wide Association Study of Myasthenia Gravis

Subject - Sample Mapping

pht003778
Descripción

pht003778

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descripción

SUBJECT_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Descripción

SAMPLE_ID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1299222
Sample Use
Descripción

SAMPLE_USE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C1524063
Name of genotyping file
Descripción

FILE_NAME

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0027365
UMLS CUI [1,2]
C1285573
UMLS CUI [1,3]
C0016094

Similar models

Subject - Sample Mapping

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht003778
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SAMPLE_ID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Sample Use
text
C2347026 (UMLS CUI [1,1])
C1524063 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
SNP genotypes obtained using standard or custom microarrays (Array_SNP)
C2347026 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
C0752046 (UMLS CUI [1,3])
C1449575 (UMLS CUI [1,4])
FILE_NAME
Item
Name of genotyping file
string
C0027365 (UMLS CUI [1,1])
C1285573 (UMLS CUI [1,2])
C0016094 (UMLS CUI [1,3])

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