ID

45526

Beskrivning

Principal Investigator: Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA MeSH: Bacterial Infections https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000735 This study is to investigate placental microbiome through 16S rDNA-based and whole genome shotgun metagenomic sequencing. Identified taxa and their gene carriage patterns were compared to other human body sites niches. The placental microbiome profiles were most akin to the human oral microbiome.

Länk

dbGaP study = phs000735

Nyckelord

Versioner (1)
  1. 2022-12-20 2022-12-20 - Simon Heim
Rättsinnehavare

Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA

Uppladdad den

20 december 2022

DOI

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Licens

Creative Commons BY 4.0
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dbGaP phs000735 The Placenta Harbors a Unique Microbiome

Engelsk

Sample - Attribute Information

5 Formulär  
pht003798
Beskrivning

pht003798

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beskrivning

SAMPLE_ID

Datatyp

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beskrivning

BODY_SITE

Datatyp

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beskrivning

ANALYTE_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C4744818
Cell or tissue type or subtype of sample
Beskrivning

HISTOLOGICAL_TYPE

Datatyp

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Beskrivning

IS_TUMOR

Datatyp

text

Alias
UMLS CUI [1,1]
C0475752
Subject has antepartum infection or not
Beskrivning

InfectionAntepartum

Datatyp

text

Alias
UMLS CUI [1,1]
C0157182
UMLS CUI [1,2]
C0681850
Subject gave preterm birth or not
Beskrivning

PretermBirth

Datatyp

text

Alias
UMLS CUI [1,1]
C0681850
UMLS CUI [1,2]
C0151526
Tillbaka till toppen

Similar models

Sample - Attribute Information

5 Formulär
Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
pht003798
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (NO)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (YES)
C0027651 (UMLS CUI [1,1])
Item
Subject has antepartum infection or not
text
C0157182 (UMLS CUI [1,1])
C0681850 (UMLS CUI [1,2])
InfectionAntepartum
Code List
Subject has antepartum infection or not
CL Item
No antepartum infection (NO)
CL Item
Has antepartum infection (YES)
Item
Subject gave preterm birth or not
text
C0681850 (UMLS CUI [1,1])
C0151526 (UMLS CUI [1,2])
PretermBirth
Code List
Subject gave preterm birth or not
CL Item
Term birth (NO)
CL Item
Preterm birth (YES)
Tillbaka till toppen 

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