ID

45526

Beschrijving

Principal Investigator: Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA MeSH: Bacterial Infections https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000735 This study is to investigate placental microbiome through 16S rDNA-based and whole genome shotgun metagenomic sequencing. Identified taxa and their gene carriage patterns were compared to other human body sites niches. The placental microbiome profiles were most akin to the human oral microbiome.

Link

dbGaP study = phs000735

Trefwoorden

Versies (1)
  1. 20-12-22 20-12-22 - Simon Heim
Houder van rechten

Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA

Geüploaded op

20 december 2022

DOI

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Licentie

Creative Commons BY 4.0
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dbGaP phs000735 The Placenta Harbors a Unique Microbiome

Engels

Sample - Attribute Information

5 Formulieren  
pht003798
Beschrijving

pht003798

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Beschrijving

SAMPLE_ID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Cell or tissue type or subtype of sample
Beschrijving

HISTOLOGICAL_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Subject has antepartum infection or not
Beschrijving

InfectionAntepartum

Datatype

text

Alias
UMLS CUI [1,1]
C0157182
UMLS CUI [1,2]
C0681850
Subject gave preterm birth or not
Beschrijving

PretermBirth

Datatype

text

Alias
UMLS CUI [1,1]
C0681850
UMLS CUI [1,2]
C0151526
Terug naar het begin van de pagina

Similar models

Sample - Attribute Information

5 Formulieren
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht003798
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (NO)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (YES)
C0027651 (UMLS CUI [1,1])
Item
Subject has antepartum infection or not
text
C0157182 (UMLS CUI [1,1])
C0681850 (UMLS CUI [1,2])
InfectionAntepartum
Code List
Subject has antepartum infection or not
CL Item
No antepartum infection (NO)
CL Item
Has antepartum infection (YES)
Item
Subject gave preterm birth or not
text
C0681850 (UMLS CUI [1,1])
C0151526 (UMLS CUI [1,2])
PretermBirth
Code List
Subject gave preterm birth or not
CL Item
Term birth (NO)
CL Item
Preterm birth (YES)
Terug naar het begin van de pagina 

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