ID

45526

Description

Principal Investigator: Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA MeSH: Bacterial Infections https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000735 This study is to investigate placental microbiome through 16S rDNA-based and whole genome shotgun metagenomic sequencing. Identified taxa and their gene carriage patterns were compared to other human body sites niches. The placental microbiome profiles were most akin to the human oral microbiome.

Link

dbGaP study = phs000735

Keywords

Versions (1)
  1. 12/20/22 12/20/22 - Simon Heim
Copyright Holder

Aagaard, Kjersti, M.D., Ph.D, Baylor College of Medicine, Houston, TX, USA

Uploaded on

December 20, 2022

DOI

To request one please log in.

License

Creative Commons BY 4.0
Model comments :

You can comment on the data model here. Via the speech bubbles at the itemgroups and items you can add comments to those specificially.

Back to model comments
Itemgroup comments for :

Item comments for :

  • Newest
  • Oldest
  • Popular
  • Newest
    • Newest
    • Oldest
    • Popular

No comments

In order to download data models you must be logged in. Please log in or register for free.

dbGaP phs000735 The Placenta Harbors a Unique Microbiome

English

Sample - Attribute Information

5 forms  
pht003798
Description

pht003798

Alias
UMLS CUI [1,1]
C3846158
De-identified Sample ID
Description

SAMPLE_ID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C0449705
Analyte Type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Subject has antepartum infection or not
Description

InfectionAntepartum

Data type

text

Alias
UMLS CUI [1,1]
C0157182
UMLS CUI [1,2]
C0681850
Subject gave preterm birth or not
Description

PretermBirth

Data type

text

Alias
UMLS CUI [1,1]
C0681850
UMLS CUI [1,2]
C0151526
Back to the top of the page

Similar models

Sample - Attribute Information

5 forms
Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht003798
C3846158 (UMLS CUI [1,1])
SAMPLE_ID
Item
De-identified Sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
IS_TUMOR
Code List
Tumor status
CL Item
Is not a tumor (NO)
C0027651 (UMLS CUI [1,1])
C1518422 (UMLS CUI [1,2])
CL Item
Is Tumor (YES)
C0027651 (UMLS CUI [1,1])
Item
Subject has antepartum infection or not
text
C0157182 (UMLS CUI [1,1])
C0681850 (UMLS CUI [1,2])
InfectionAntepartum
Code List
Subject has antepartum infection or not
CL Item
No antepartum infection (NO)
CL Item
Has antepartum infection (YES)
Item
Subject gave preterm birth or not
text
C0681850 (UMLS CUI [1,1])
C0151526 (UMLS CUI [1,2])
PretermBirth
Code List
Subject gave preterm birth or not
CL Item
Term birth (NO)
CL Item
Preterm birth (YES)
Back to the top of the page 

Contact

Please use this form for feedback, questions and suggestions for improvements.

Fields marked with * are required.

Help

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial