ID

45519

Descrição

Principal Investigator: Eric O. Johnson, PhD, RTI International, Research Triangle Park, North Carolina, USA MeSH: HIV,Viral Load,Substance Abuse, intravenous https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000454 The overarching goal of this project is to identify and characterize genetic determinants of HIV 1 susceptibility and resistance in samples of African American (AA) and European American (EA) injection drug users (IDUs) by conducting (1) a case/control genome-wide association (GWA) study of HIV 1 infection (positive/negative); (2) a case-only GWA study of viral load among HIV+ IDUs. The study uses existing samples and data from Urban Health Study (UHS) (PI: Alex Kral), which was the longest-running study of street-recruited IDUs in North America, from 1986-2005. UHS was a serial, cross-sectional sero-epidemiological study. Data were collected every 6 months in communities with a high prevalence of injection drug use in the San Francisco Bay Area. It used targeted sampling in neighborhoods at easily accessible community field sites, such as churches, single room occupancy hotels, and community centers. Eligibility criteria for initial entry to the study were (1) injection drug use in past 30 days; (2) ability to provide informed consent; and (3) age 18 or older. The UHS cohort includes over 9,000 African American and European American IDUs whose serum samples have been stored and data are available on HIV antibody status, HIV risk behaviors, drug abuse and demographics. The current study includes 984 HIV+ cases and 2,243 HIV- controls. Approximately two HIV- controls per case were frequency matched on: (1) self-reported ancestry; (2) sex; (3) age; (4) year of ascertainment; and (5) HIV risk class. This GWAS (DA026141) was funded by the National Institute on Drug Abuse (NIDA; PI: Eric O. Johnson). Funding support for genotyping, which was performed at the Johns Hopkins University Center for Inherited Disease Research (CIDR), was provided by NIDA and the NIH contract "High throughput genotyping for studying the genetic contributions to human disease"(HHSN268200782096C).

Link

dbGaP study = phs000454

Palavras-chave

  1. 14/12/2022 14/12/2022 - Adrian Schulz
Titular dos direitos

Eric O. Johnson, PhD, RTI International, Research Triangle Park, North Carolina, USA

Transferido a

14 de dezembro de 2022

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000454 HIV-1 Host Genetics Among Injection Drug Users

Pedigree Information

pht003326
Descrição

pht003326

Alias
UMLS CUI [1,1]
C3846158
Family ID
Descrição

FAMID

Tipo de dados

text

Alias
UMLS CUI [1,1]
C3669174
Subject ID
Descrição

SUBJID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0030761
Father ID
Descrição

FATHER

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3669177
UMLS CUI [1,2]
C0030761
Mother ID
Descrição

MOTHER

Tipo de dados

string

Alias
UMLS CUI [1,1]
C3669352
UMLS CUI [1,2]
C0030761
Subject's sex
Descrição

SEX

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0079399

Similar models

Pedigree Information

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht003326
C3846158 (UMLS CUI [1,1])
FAMID
Item
Family ID
text
C3669174 (UMLS CUI [1,1])
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
C0030761 (UMLS CUI [1,2])
FATHER
Item
Father ID
string
C3669177 (UMLS CUI [1,1])
C0030761 (UMLS CUI [1,2])
MOTHER
Item
Mother ID
string
C3669352 (UMLS CUI [1,1])
C0030761 (UMLS CUI [1,2])
Item
Subject's sex
text
C0079399 (UMLS CUI [1,1])
Code List
Subject's sex
CL Item
Male (1)
C0086582 (UMLS CUI [1,1])
CL Item
Female (2)
C0086287 (UMLS CUI [1,1])

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