ID

45519

Descrição

Principal Investigator: Eric O. Johnson, PhD, RTI International, Research Triangle Park, North Carolina, USA MeSH: HIV,Viral Load,Substance Abuse, intravenous https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000454 The overarching goal of this project is to identify and characterize genetic determinants of HIV 1 susceptibility and resistance in samples of African American (AA) and European American (EA) injection drug users (IDUs) by conducting (1) a case/control genome-wide association (GWA) study of HIV 1 infection (positive/negative); (2) a case-only GWA study of viral load among HIV+ IDUs. The study uses existing samples and data from Urban Health Study (UHS) (PI: Alex Kral), which was the longest-running study of street-recruited IDUs in North America, from 1986-2005. UHS was a serial, cross-sectional sero-epidemiological study. Data were collected every 6 months in communities with a high prevalence of injection drug use in the San Francisco Bay Area. It used targeted sampling in neighborhoods at easily accessible community field sites, such as churches, single room occupancy hotels, and community centers. Eligibility criteria for initial entry to the study were (1) injection drug use in past 30 days; (2) ability to provide informed consent; and (3) age 18 or older. The UHS cohort includes over 9,000 African American and European American IDUs whose serum samples have been stored and data are available on HIV antibody status, HIV risk behaviors, drug abuse and demographics. The current study includes 984 HIV+ cases and 2,243 HIV- controls. Approximately two HIV- controls per case were frequency matched on: (1) self-reported ancestry; (2) sex; (3) age; (4) year of ascertainment; and (5) HIV risk class. This GWAS (DA026141) was funded by the National Institute on Drug Abuse (NIDA; PI: Eric O. Johnson). Funding support for genotyping, which was performed at the Johns Hopkins University Center for Inherited Disease Research (CIDR), was provided by NIDA and the NIH contract "High throughput genotyping for studying the genetic contributions to human disease"(HHSN268200782096C).

Link

dbGaP study = phs000454

Palavras-chave

  1. 14/12/2022 14/12/2022 - Adrian Schulz
Titular dos direitos

Eric O. Johnson, PhD, RTI International, Research Triangle Park, North Carolina, USA

Transferido a

14 de dezembro de 2022

DOI

Para um pedido faça login.

Licença

Creative Commons BY 4.0

Comentários do modelo :

Aqui pode comentar o modelo. Pode comentá-lo especificamente através dos balões de texto nos grupos de itens e itens.

Comentários do grupo de itens para :

Comentários do item para :


Sem comentários

Para descarregar formulários, precisa de ter uma sessão iniciada. Por favor faça login ou registe-se gratuitamente.

dbGaP phs000454 HIV-1 Host Genetics Among Injection Drug Users

Subject - Sample Mapping

pht002649
Descrição

pht002649

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descrição

SUBJID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Descrição

SAMPID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1299222
Sample Use
Descrição

SAMPLE_USE

Tipo de dados

text

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0042153
'Coriell' for HapMap samples
Descrição

SOURCE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0018591
UMLS CUI [1,3]
C0024779
'Coriell' ID for HapMap samples
Descrição

SOURCE_SAMPID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0018591
UMLS CUI [1,3]
C0024779

Similar models

Subject - Sample Mapping

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht002649
C3846158 (UMLS CUI [1,1])
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Sample Use
text
C2347026 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
SNP genotypes obtained using standard or custom microarrays (SNP_Array)
C2347026 (UMLS CUI [1,1])
C0042153 (UMLS CUI [1,2])
C0752046 (UMLS CUI [1,3])
C1449575 (UMLS CUI [1,4])
SOURCE
Item
'Coriell' for HapMap samples
string
C2347026 (UMLS CUI [1,1])
C0018591 (UMLS CUI [1,2])
C0024779 (UMLS CUI [1,3])
SOURCE_SAMPID
Item
'Coriell' ID for HapMap samples
string
C1299222 (UMLS CUI [1,1])
C0018591 (UMLS CUI [1,2])
C0024779 (UMLS CUI [1,3])

Do you need help on how to use the search function? Please watch the corresponding tutorial video for more details and learn how to use the search function most efficiently.

Watch Tutorial