0 Evaluaciones

ID

45518

Descripción

Principal Investigator: Steven Treon, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA MeSH: Waldenstrom Macroglobulinemia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000740 Whole genome sequencing was conducted on 10 tumor/germline paired samples along with 20 additional unpaired tumor samples from patients with Waldesntrom's macroglobulinemia. Tumor lymphoplasmacytic lymphoma cells were obtained from CD19+ selected bone marrow mononuclear cells. Germline tissue was obtained from CD19 depleted peripheral blood mononuclear cells. High molecular weight DNA was then submitted for whole genome sequencing with Complete Genomics and aligned to HG19/NCBI human reference build 37.

Link

dbGaP-study=phs000740

Palabras clave

  1. 14/12/22 14/12/22 - Chiara Middel
Titular de derechos de autor

Steven Treon, MD, PhD, Dana-Farber Cancer Institute, Boston, MA, USA

Subido en

14 de diciembre de 2022

DOI

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Licencia

Creative Commons BY 4.0

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    dbGaP phs000740 Whole Genome Sequencing of Waldenstrom's Macroglobulinemia

    Subject ID, sex, and paired germ line sample control of participants with or without Waldesntrom macroglobulinemia and involved in the "Whole Genome Sequencing of Waldenstrom's Macroblulinemia".

    pht003818
    Descripción

    pht003818

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified Sample ID
    Descripción

    SAMPLE_ID

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C1299222
    Body site where sample was collected
    Descripción

    BODY_SITE

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C0449705
    Analyte Type
    Descripción

    ANALYTE_TYPE

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C4744818
    Tumor status
    Descripción

    IS_TUMOR

    Tipo de datos

    text

    Alias
    UMLS CUI [1,1]
    C0475752
    Cell or tissue type or subtype of sample
    Descripción

    HISTOLOGICAL_TYPE

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C2347026
    UMLS CUI [1,2]
    C0007634
    UMLS CUI [1,3]
    C0332307
    UMLS CUI [2,1]
    C2347026
    UMLS CUI [2,2]
    C0007634
    UMLS CUI [2,3]
    C0449560
    UMLS CUI [3,1]
    C1292533
    UMLS CUI [3,2]
    C0332307
    UMLS CUI [4,1]
    C1292533
    UMLS CUI [4,2]
    C0449560
    Name of the center which conducted sequencing
    Descripción

    SEQUENCING_CENTER

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C1301943
    UMLS CUI [1,2]
    C0565990
    UMLS CUI [1,3]
    C1561491

    Similar models

    Subject ID, sex, and paired germ line sample control of participants with or without Waldesntrom macroglobulinemia and involved in the "Whole Genome Sequencing of Waldenstrom's Macroblulinemia".

    Name
    Tipo
    Description | Question | Decode (Coded Value)
    Tipo de datos
    Alias
    Item Group
    pht003818
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified Sample ID
    string
    C4684638 (UMLS CUI [1,1])
    C1299222 (UMLS CUI [1,2])
    Item
    Body site where sample was collected
    string
    C0449705 (UMLS CUI [1,1])
    Code List
    Body site where sample was collected
    CL Item
    Bone marrow aspirate (B)
    CL Item
    Peripheral blood (P)
    ANALYTE_TYPE
    Item
    Analyte Type
    string
    C4744818 (UMLS CUI [1,1])
    Item
    Tumor status
    text
    C0475752 (UMLS CUI [1,1])
    Code List
    Tumor status
    CL Item
    Is not a tumor (N)
    C0027651 (UMLS CUI [1,1])
    C1518422 (UMLS CUI [1,2])
    CL Item
    Is Tumor (Y)
    C0027651 (UMLS CUI [1,1])
    Item
    Cell or tissue type or subtype of sample
    string
    C2347026 (UMLS CUI [1,1])
    C0007634 (UMLS CUI [1,2])
    C0332307 (UMLS CUI [1,3])
    C2347026 (UMLS CUI [2,1])
    C0007634 (UMLS CUI [2,2])
    C0449560 (UMLS CUI [2,3])
    C1292533 (UMLS CUI [3,1])
    C0332307 (UMLS CUI [3,2])
    C1292533 (UMLS CUI [4,1])
    C0449560 (UMLS CUI [4,2])
    Code List
    Cell or tissue type or subtype of sample
    CL Item
    CD19 selected bone marrow lymphoplasmacytic cells (B)
    CL Item
    CD19 depleted peripheral blood mononuclear cells (P)
    Item
    Name of the center which conducted sequencing
    string
    C1301943 (UMLS CUI [1,1])
    C0565990 (UMLS CUI [1,2])
    C1561491 (UMLS CUI [1,3])
    Code List
    Name of the center which conducted sequencing
    CL Item
    Complete Genomics Inc. (C)

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