0 Bedömningar

ID

45513

Beskrivning

Principal Investigator: Sami N. Malek, MD, University of Michigan Department of Internal Medicine, Division of Hematology-Oncology, Ann Arbor, MI, USA MeSH: Lymphoma, Follicular,Lymphoma, Non-Hodgkin https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000729 A cohort of follicular lymphoma cases had tumor cells purified from tissue samples after informed consent using flow cytometry. DNA was extracted from the cells, and samples were subjected to solution-based exome capture using the Illumina TruSeq Exome Enrichment Kit and the Illumina HiSeq 2000 platform.

Länk

dbGaP study = phs000729

Nyckelord

  1. 2022-12-13 2022-12-13 - Simon Heim
Rättsinnehavare

Sami N. Malek, MD, University of Michigan Department of Internal Medicine, Division of Hematology-Oncology, Ann Arbor, MI, USA

Uppladdad den

13 december 2022

DOI

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Licens

Creative Commons BY 4.0

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    dbGaP phs000729 Follicular Lymphoma 2013 - Malek

    Sample ID, body site where sample was obtained, analyte type, tumor status of sample, histological type of cancer, and method for tumor and normal cell purification of participants with follicular lymphoma and involved in the "Solution-based exome capture and HiSeq2000-based massively parallel sequencing of Follicular Lymphoma" project.

    pht003776
    Beskrivning

    pht003776

    Alias
    UMLS CUI [1,1]
    C3846158 (Other Coding)
    LOINC
    LA4728-7
    De-identified sample ID
    Beskrivning

    SAMPLE_ID

    Datatyp

    text

    Alias
    UMLS CUI [1,1]
    C4684638 (De-identified Information)
    UMLS CUI [1,2]
    C1299222 (Sample identification number)
    SNOMED
    372274003
    Body site where sample was collected
    Beskrivning

    BODY_SITE

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0449705 (Site of sampling)
    SNOMED
    246317007
    LOINC
    MTHU008875
    Analyte type
    Beskrivning

    ANALYTE_TYPE

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C4744818 (Analyte Type)
    Tumor status
    Beskrivning

    IS_TUMOR

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0475752 (Tumor status)
    SNOMED
    277058005
    Immunophenotypic definition of cells from which DNA was extracted
    Beskrivning

    HISTOLOGICAL_TYPE

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C4745253 (Immunophenotypic Finding)
    UMLS CUI [1,2]
    C1704788 (Definition)
    UMLS CUI [1,3]
    C0007634 (Cells)
    SNOMED
    4421005
    LOINC
    LP14738-6
    UMLS CUI [1,4]
    C0185115 (Extraction)
    SNOMED
    129415008
    UMLS CUI [1,5]
    C0012854 (DNA)
    SNOMED
    24851008
    LOINC
    LP32416-7
    Instrumentation method for tumor or normal cell purification
    Beskrivning

    SOURCE_CELLULAR_DNA

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0587378 (Instrumentation - action)
    UMLS CUI [1,2]
    C0025663 (Methods)
    SNOMED
    260686004
    UMLS CUI [1,3]
    C0027651 (Neoplasms)
    SNOMED
    108369006
    UMLS CUI [1,4]
    C1268443 (Normal cell)
    SNOMED
    118957004
    UMLS CUI [1,5]
    C1998793 (Purifying)

    Similar models

    Sample ID, body site where sample was obtained, analyte type, tumor status of sample, histological type of cancer, and method for tumor and normal cell purification of participants with follicular lymphoma and involved in the "Solution-based exome capture and HiSeq2000-based massively parallel sequencing of Follicular Lymphoma" project.

    Name
    Typ
    Description | Question | Decode (Coded Value)
    Datatyp
    Alias
    Item Group
    pht003776
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified sample ID
    text
    C4684638 (UMLS CUI [1,1])
    C1299222 (UMLS CUI [1,2])
    BODY_SITE
    Item
    Body site where sample was collected
    string
    C0449705 (UMLS CUI [1,1])
    ANALYTE_TYPE
    Item
    Analyte type
    string
    C4744818 (UMLS CUI [1,1])
    IS_TUMOR
    Item
    Tumor status
    string
    C0475752 (UMLS CUI [1,1])
    HISTOLOGICAL_TYPE
    Item
    Immunophenotypic definition of cells from which DNA was extracted
    string
    C4745253 (UMLS CUI [1,1])
    C1704788 (UMLS CUI [1,2])
    C0007634 (UMLS CUI [1,3])
    C0185115 (UMLS CUI [1,4])
    C0012854 (UMLS CUI [1,5])
    SOURCE_CELLULAR_DNA
    Item
    Instrumentation method for tumor or normal cell purification
    string
    C0587378 (UMLS CUI [1,1])
    C0025663 (UMLS CUI [1,2])
    C0027651 (UMLS CUI [1,3])
    C1268443 (UMLS CUI [1,4])
    C1998793 (UMLS CUI [1,5])

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