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ID

45513

Description

Principal Investigator: Sami N. Malek, MD, University of Michigan Department of Internal Medicine, Division of Hematology-Oncology, Ann Arbor, MI, USA MeSH: Lymphoma, Follicular,Lymphoma, Non-Hodgkin https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000729 A cohort of follicular lymphoma cases had tumor cells purified from tissue samples after informed consent using flow cytometry. DNA was extracted from the cells, and samples were subjected to solution-based exome capture using the Illumina TruSeq Exome Enrichment Kit and the Illumina HiSeq 2000 platform.

Link

dbGaP study = phs000729

Keywords

  1. 12/13/22 12/13/22 - Simon Heim
Copyright Holder

Sami N. Malek, MD, University of Michigan Department of Internal Medicine, Division of Hematology-Oncology, Ann Arbor, MI, USA

Uploaded on

December 13, 2022

DOI

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License

Creative Commons BY 4.0

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    dbGaP phs000729 Follicular Lymphoma 2013 - Malek

    Sample ID, body site where sample was obtained, analyte type, tumor status of sample, histological type of cancer, and method for tumor and normal cell purification of participants with follicular lymphoma and involved in the "Solution-based exome capture and HiSeq2000-based massively parallel sequencing of Follicular Lymphoma" project.

    pht003776
    Description

    pht003776

    Alias
    UMLS CUI [1,1]
    C3846158
    De-identified sample ID
    Description

    SAMPLE_ID

    Data type

    text

    Alias
    UMLS CUI [1,1]
    C4684638
    UMLS CUI [1,2]
    C1299222
    Body site where sample was collected
    Description

    BODY_SITE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0449705
    Analyte type
    Description

    ANALYTE_TYPE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C4744818
    Tumor status
    Description

    IS_TUMOR

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0475752
    Immunophenotypic definition of cells from which DNA was extracted
    Description

    HISTOLOGICAL_TYPE

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C4745253
    UMLS CUI [1,2]
    C1704788
    UMLS CUI [1,3]
    C0007634
    UMLS CUI [1,4]
    C0185115
    UMLS CUI [1,5]
    C0012854
    Instrumentation method for tumor or normal cell purification
    Description

    SOURCE_CELLULAR_DNA

    Data type

    string

    Alias
    UMLS CUI [1,1]
    C0587378
    UMLS CUI [1,2]
    C0025663
    UMLS CUI [1,3]
    C0027651
    UMLS CUI [1,4]
    C1268443
    UMLS CUI [1,5]
    C1998793

    Similar models

    Sample ID, body site where sample was obtained, analyte type, tumor status of sample, histological type of cancer, and method for tumor and normal cell purification of participants with follicular lymphoma and involved in the "Solution-based exome capture and HiSeq2000-based massively parallel sequencing of Follicular Lymphoma" project.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Data type
    Alias
    Item Group
    pht003776
    C3846158 (UMLS CUI [1,1])
    SAMPLE_ID
    Item
    De-identified sample ID
    text
    C4684638 (UMLS CUI [1,1])
    C1299222 (UMLS CUI [1,2])
    BODY_SITE
    Item
    Body site where sample was collected
    string
    C0449705 (UMLS CUI [1,1])
    ANALYTE_TYPE
    Item
    Analyte type
    string
    C4744818 (UMLS CUI [1,1])
    IS_TUMOR
    Item
    Tumor status
    string
    C0475752 (UMLS CUI [1,1])
    HISTOLOGICAL_TYPE
    Item
    Immunophenotypic definition of cells from which DNA was extracted
    string
    C4745253 (UMLS CUI [1,1])
    C1704788 (UMLS CUI [1,2])
    C0007634 (UMLS CUI [1,3])
    C0185115 (UMLS CUI [1,4])
    C0012854 (UMLS CUI [1,5])
    SOURCE_CELLULAR_DNA
    Item
    Instrumentation method for tumor or normal cell purification
    string
    C0587378 (UMLS CUI [1,1])
    C0025663 (UMLS CUI [1,2])
    C0027651 (UMLS CUI [1,3])
    C1268443 (UMLS CUI [1,4])
    C1998793 (UMLS CUI [1,5])

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