ID

45478

Descrizione

Principal Investigator: Arul M. Chinnaiyan, MD, PhD, Michigan Center for Translational Pathology, University of Michigan Ann Arbor, Michigan, USA MeSH: Breast Neoplasms https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000513 Paired-end transcriptome sequencing was performed on a panel of breast cancer cell lines and tissues and a set of benign cell line and tissue controls. Analyses of the paired end sequences were performed and chimeric transcripts derived from gene rearrangement events were identified. Sequencing was performed on Illumina GAII and HiSeq 2000 platforms with read lengths from 40 to 100 bases.

collegamento

dbGap study = phs000513

Keywords

  1. 07/11/22 07/11/22 - Simon Heim
  2. 13/12/22 13/12/22 - Kristina Keller
Titolare del copyright

Arul M. Chinnaiyan, MD, PhD, Michigan Center for Translational Pathology, University of Michigan Ann Arbor, Michigan, USA

Caricato su

13 dicembre 2022

DOI

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Licenza

Creative Commons BY 4.0

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dbGaP phs000513 MAST Kinase and Notch Gene Families in Breast Cancer

Subject ID, subject source, subject source ID, consent group, and affection status of participants with breast cancer and involved in the "Rearrangements of the MAST Kinase and Notch Gene Families in Breast Cancer" project.

pht002824
Descrizione

pht002824

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Descrizione

SUBJID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Descrizione

CONSENT

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C1257890
Source repository where subjects originate
Descrizione

SUBJ_SOURCE

Tipo di dati

string

Alias
UMLS CUI [1,1]
C3847505
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0681850
Subject ID used in the Source Repository
Descrizione

SOURCE_SUBJID

Tipo di dati

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C3847505
UMLS CUI [1,3]
C0449416
Case control status of the subject
Descrizione

AFFECTION_STATUS

Tipo di dati

text

Alias
UMLS CUI [1,1]
C3274646

Similar models

Subject ID, subject source, subject source ID, consent group, and affection status of participants with breast cancer and involved in the "Rearrangements of the MAST Kinase and Notch Gene Families in Breast Cancer" project.

Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht002824
C3846158 (UMLS CUI [1,1])
SUBJID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
Code List
Consent group as determined by DAC
CL Item
Cancer Research and General Methods (CRGM) (1)
SUBJ_SOURCE
Item
Source repository where subjects originate
string
C3847505 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0681850 (UMLS CUI [1,3])
SOURCE_SUBJID
Item
Subject ID used in the Source Repository
string
C2348585 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
Item
Case control status of the subject
text
C3274646 (UMLS CUI [1,1])
Code List
Case control status of the subject
CL Item
Control (1)
C3274648 (UMLS CUI [1,1])
CL Item
Case (2)
C3274647 (UMLS CUI [1,1])
CL Item
Other (3)

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