ID

45474

Beschrijving

Principal Investigator: E. Ann Coleman, University of Arkansas for Medical Sciences Little Rock, Arkansas, USA MeSH: Multiple Myeloma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000545 We hypothesized that genetic variability in the enzymes/proteins involved in drug metabolism, inflammation, and immune function is a major underlying contributor to mucositis incidence and progression and that, based on this variability we can identify variants that influence risk, and develop a mucositis progression prediction model that improves on existing models by incorporating genetic variability along with clinical factors. Using genome wide association study (GWAS) combined with a pathway candidate gene approach and a modified case-control study method, we investigated the hypothesis in a sample of 1092 patients who received a myeloablative dose of melphalan (MEL) followed by autologous hematopoietic stem cell (ASCT) transplantation as treatment for multiple myeloma and for whom banked blood stem cell samples and clinical data were available.

Link

dbGap study = phs000545

Trefwoorden

  1. 31-10-22 31-10-22 - Simon Heim
  2. 13-12-22 13-12-22 - Kristina Keller
Houder van rechten

E. Ann Coleman, University of Arkansas for Medical Sciences Little Rock, Arkansas, USA

Geüploaded op

13 december 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000545 Predicting Chemotherapy-Induced Mucositis with Genetic and Clinical Factors

Subject ID, age, type of cancer, BMI, body surface area, weight, gender, race, hematocrit, hemoglobin, GFR, creatinine, albumin, c-reactive protein, Melphelan dose, beta-microglobulin, myeloma isotype, mucositis grade, and CMV of participants involved in the "Predicting Chemotherapy-Induced Mucositis with Genetic and Clinical Factors" project.

pht003764
Beschrijving

pht003764

De-identified ID
Beschrijving

PublicID

Datatype

text

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Age at treatment (years)
Beschrijving

age

Datatype

text

Maateenheden
  • Years
Alias
UMLS CUI [1,1]
C4085942
Years
Type of cancer
Beschrijving

cancertype

Datatype

string

Alias
UMLS CUI [1,1]
C4743729
Body Mass Index (kg/m**2)
Beschrijving

bmi

Datatype

float

Maateenheden
  • kg/m**2
Alias
UMLS CUI [1,1]
C1305855
kg/m**2
Body surface area (m**2)
Beschrijving

bsa

Datatype

float

Maateenheden
  • m**2
Alias
UMLS CUI [1,1]
C0005902
m**2
Weight (kgs)
Beschrijving

wt_kg

Datatype

float

Maateenheden
  • kg
Alias
UMLS CUI [1,1]
C0005910
kg
Gender
Beschrijving

gender

Datatype

string

Alias
UMLS CUI [1,1]
C0079399
Race
Beschrijving

race

Datatype

string

Alias
UMLS CUI [1,1]
C0034510
Hematocrit (%)
Beschrijving

hct

Datatype

float

Maateenheden
  • %
Alias
UMLS CUI [1,1]
C0518014
%
Hemoglobin (g/dL)
Beschrijving

hb

Datatype

float

Maateenheden
  • g/dL
Alias
UMLS CUI [1,1]
C0019046
UMLS CUI [1,2]
C1274040
UMLS CUI [1,3]
C0022885
UMLS CUI [1,4]
C1522609
g/dL
Estimated GFR (ml/min)
Beschrijving

est_gfr

Datatype

float

Maateenheden
  • ml/min
Alias
UMLS CUI [1,1]
C3811844
ml/min
Serum creatinine (mg/dL)
Beschrijving

cr

Datatype

float

Maateenheden
  • mg/dL
Alias
UMLS CUI [1,1]
C0600061
mg/dL
Creatinine Clearance (ml/min)
Beschrijving

crcl

Datatype

float

Maateenheden
  • ml/min
Alias
UMLS CUI [1,1]
C0373595
ml/min
Albumin (g/dL)
Beschrijving

alb

Datatype

float

Maateenheden
  • g/dL
Alias
UMLS CUI [1,1]
C0363885
g/dL
C-reactive protein (mg/L)
Beschrijving

crp

Datatype

float

Maateenheden
  • mg/L
Alias
UMLS CUI [1,1]
C0006560
mg/L
Melphelan dose (mg/kg)
Beschrijving

mg_kg

Datatype

float

Maateenheden
  • mg/kg
Alias
UMLS CUI [1,1]
C0025241
UMLS CUI [1,2]
C3174092
mg/kg
Beta-microglobulin
Beschrijving

b2m

Datatype

float

Alias
UMLS CUI [1,1]
C0201910
Myeloma Isotype
Beschrijving

isotype

Datatype

string

Alias
UMLS CUI [1,1]
C0026764
UMLS CUI [1,2]
C0021017
Upper GI mucositis grade
Beschrijving

ugr

Datatype

text

Alias
UMLS CUI [1,1]
C0521585
UMLS CUI [1,2]
C3203348
Lower GI mucositis grade
Beschrijving

lgr

Datatype

text

Alias
UMLS CUI [1,1]
C0521585
UMLS CUI [1,2]
C0226875
Presence of C. difficile
Beschrijving

cdiff

Datatype

string

Alias
UMLS CUI [1,1]
C4687402
CMV reactive
Beschrijving

cmv_rea

Datatype

text

Alias
UMLS CUI [1,1]
C0010825
UMLS CUI [1,2]
C0205332
CMV serostatus
Beschrijving

cmv_sero

Datatype

text

Alias
UMLS CUI [1,1]
C0582172
Upper GI mucositis case control
Beschrijving

case_control_upperGI

Datatype

text

Alias
UMLS CUI [1,1]
C3203348
UMLS CUI [1,2]
C0521585
UMLS CUI [1,3]
C0872128
Lower GI mucositis case control
Beschrijving

case_control_lowerGI

Datatype

text

Alias
UMLS CUI [1,1]
C0226875
UMLS CUI [1,2]
C0521585
UMLS CUI [1,3]
C0872128

Similar models

Subject ID, age, type of cancer, BMI, body surface area, weight, gender, race, hematocrit, hemoglobin, GFR, creatinine, albumin, c-reactive protein, Melphelan dose, beta-microglobulin, myeloma isotype, mucositis grade, and CMV of participants involved in the "Predicting Chemotherapy-Induced Mucositis with Genetic and Clinical Factors" project.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht003764
PublicID
Item
De-identified ID
text
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
age
Item
Age at treatment (years)
text
C4085942 (UMLS CUI [1,1])
cancertype
Item
Type of cancer
string
C4743729 (UMLS CUI [1,1])
bmi
Item
Body Mass Index (kg/m**2)
float
C1305855 (UMLS CUI [1,1])
bsa
Item
Body surface area (m**2)
float
C0005902 (UMLS CUI [1,1])
wt_kg
Item
Weight (kgs)
float
C0005910 (UMLS CUI [1,1])
gender
Item
Gender
string
C0079399 (UMLS CUI [1,1])
race
Item
Race
string
C0034510 (UMLS CUI [1,1])
hct
Item
Hematocrit (%)
float
C0518014 (UMLS CUI [1,1])
hb
Item
Hemoglobin (g/dL)
float
C0019046 (UMLS CUI [1,1])
C1274040 (UMLS CUI [1,2])
C0022885 (UMLS CUI [1,3])
C1522609 (UMLS CUI [1,4])
est_gfr
Item
Estimated GFR (ml/min)
float
C3811844 (UMLS CUI [1,1])
cr
Item
Serum creatinine (mg/dL)
float
C0600061 (UMLS CUI [1,1])
crcl
Item
Creatinine Clearance (ml/min)
float
C0373595 (UMLS CUI [1,1])
alb
Item
Albumin (g/dL)
float
C0363885 (UMLS CUI [1,1])
crp
Item
C-reactive protein (mg/L)
float
C0006560 (UMLS CUI [1,1])
mg_kg
Item
Melphelan dose (mg/kg)
float
C0025241 (UMLS CUI [1,1])
C3174092 (UMLS CUI [1,2])
b2m
Item
Beta-microglobulin
float
C0201910 (UMLS CUI [1,1])
isotype
Item
Myeloma Isotype
string
C0026764 (UMLS CUI [1,1])
C0021017 (UMLS CUI [1,2])
ugr
Item
Upper GI mucositis grade
text
C0521585 (UMLS CUI [1,1])
C3203348 (UMLS CUI [1,2])
lgr
Item
Lower GI mucositis grade
text
C0521585 (UMLS CUI [1,1])
C0226875 (UMLS CUI [1,2])
cdiff
Item
Presence of C. difficile
string
C4687402 (UMLS CUI [1,1])
Item
CMV reactive
text
C0010825 (UMLS CUI [1,1])
C0205332 (UMLS CUI [1,2])
Code List
CMV reactive
CL Item
Not done (ND)
CL Item
Negative (NEG)
CL Item
Positive (POS)
Item
CMV serostatus
text
C0582172 (UMLS CUI [1,1])
Code List
CMV serostatus
CL Item
Negative (NEG)
CL Item
Positive (POS)
case_control_upperGI
Item
Upper GI mucositis case control
text
C3203348 (UMLS CUI [1,1])
C0521585 (UMLS CUI [1,2])
C0872128 (UMLS CUI [1,3])
case_control_lowerGI
Item
Lower GI mucositis case control
text
C0226875 (UMLS CUI [1,1])
C0521585 (UMLS CUI [1,2])
C0872128 (UMLS CUI [1,3])

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