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ID

45473

Descrizione

Principal Investigator: Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA MeSH: Lymphoma, Non-Hodgkin,Lymphoma, B-Cell https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000502 Splenic Marginal Zone Lymphoma (SMZL) is a B-cell malignancy of unknown pathogenesis and thus orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis of 8 paired tumor-normal DNAs from patients with SMZL, we show that the typical SMZL exome carries ~30 genetic alterations. Targeted resequencing of selected candidates in an extended panel of 40-117 samples revealed activating mutations of NOTCH2, a gene required for marginal-zone (MZ) development, as the most frequent and SMZL-specific lesion, accounting for approximately 20% of cases. Additional altered genes suggest that deregulation of signaling pathways normally involved in MZ development (NOTCH, NF-kappa B, and B-cell receptor) represents a critical event in SMZL pathogenesis. These findings have direct implications for the treatment of SMZL patients since drugs are available which can target NOTCH as well as other pathways deregulated in this disease.

collegamento

dbGap study = phs000502

Keywords

  1. 31/10/22 31/10/22 - Tabea Kampen
  2. 13/12/22 13/12/22 - Kristina Keller
Titolare del copyright

Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA

Caricato su

13 dicembre 2022

DOI

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Licenza

Creative Commons BY 4.0

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    dbGaP phs000502 Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

    Eligibility Criteria

    Inclusion and exclusion criteria
    Descrizione

    Inclusion and exclusion criteria

    Previously untreated, de novo diagnoses of Splenic Marginal Zone Lymphoma
    Descrizione

    Elig.phs000502.v1.p1.1

    Tipo di dati

    boolean

    Alias
    UMLS CUI [1,1]
    C0205156 (Previous)
    SNOMED
    9130008
    LOINC
    LP21061-4
    UMLS CUI [1,2]
    C0332155 (Did not receive therapy or drug for)
    SNOMED
    25265005
    UMLS CUI [1,3]
    C1515568 (de novo)
    UMLS CUI [1,4]
    C0349632 (Splenic Marginal Zone B-Cell Lymphoma)
    SNOMED
    763666008
    Matched tumor and normal genomic DNA
    Descrizione

    Elig.phs000502.v1.p1.2

    Tipo di dati

    boolean

    Alias
    UMLS CUI [1,1]
    C0006826 (Malignant Neoplasms)
    SNOMED
    363346000
    LOINC
    LP100805-3
    UMLS CUI [1,2]
    C0150103 (MATCHING)
    UMLS CUI [2,1]
    C0205307 (Normal)
    SNOMED
    17621005
    LOINC
    LP15963-9
    UMLS CUI [2,2]
    C0017428 (Genome)
    SNOMED
    18470003
    LOINC
    LP70575-3
    UMLS CUI [2,3]
    C0012854 (DNA)
    SNOMED
    24851008
    LOINC
    LP32416-7

    Similar models

    Eligibility Criteria

    Name
    genere
    Description | Question | Decode (Coded Value)
    Tipo di dati
    Alias
    Item Group
    Inclusion and exclusion criteria
    Elig.phs000502.v1.p1.1
    Item
    Previously untreated, de novo diagnoses of Splenic Marginal Zone Lymphoma
    boolean
    C0205156 (UMLS CUI [1,1])
    C0332155 (UMLS CUI [1,2])
    C1515568 (UMLS CUI [1,3])
    C0349632 (UMLS CUI [1,4])
    Elig.phs000502.v1.p1.2
    Item
    Matched tumor and normal genomic DNA
    boolean
    C0006826 (UMLS CUI [1,1])
    C0150103 (UMLS CUI [1,2])
    C0205307 (UMLS CUI [2,1])
    C0017428 (UMLS CUI [2,2])
    C0012854 (UMLS CUI [2,3])

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