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ID

45473

Descrizione

Principal Investigator: Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA MeSH: Lymphoma, Non-Hodgkin,Lymphoma, B-Cell https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000502 Splenic Marginal Zone Lymphoma (SMZL) is a B-cell malignancy of unknown pathogenesis and thus orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis of 8 paired tumor-normal DNAs from patients with SMZL, we show that the typical SMZL exome carries ~30 genetic alterations. Targeted resequencing of selected candidates in an extended panel of 40-117 samples revealed activating mutations of NOTCH2, a gene required for marginal-zone (MZ) development, as the most frequent and SMZL-specific lesion, accounting for approximately 20% of cases. Additional altered genes suggest that deregulation of signaling pathways normally involved in MZ development (NOTCH, NF-kappa B, and B-cell receptor) represents a critical event in SMZL pathogenesis. These findings have direct implications for the treatment of SMZL patients since drugs are available which can target NOTCH as well as other pathways deregulated in this disease.

collegamento

dbGap study = phs000502

Keywords

  1. 31/10/22 31/10/22 - Tabea Kampen
  2. 13/12/22 13/12/22 - Kristina Keller
Titolare del copyright

Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA

Caricato su

13 dicembre 2022

DOI

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Licenza

Creative Commons BY 4.0

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    dbGaP phs000502 Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

    Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

    pht002815
    Descrizione

    pht002815

    Sample ID
    Descrizione

    SAMPID

    Tipo di dati

    string

    Alias
    UMLS CUI [1,1]
    C1299222
    Tumor or normal DNA?
    Descrizione

    tumor_normal

    Tipo di dati

    text

    Alias
    UMLS CUI [1,1]
    C0205307
    UMLS CUI [1,2]
    C0012854
    UMLS CUI [2,1]
    C0027651
    UMLS CUI [2,2]
    C0012854
    Material used for analysis (DNA, RNA etc.)
    Descrizione

    Sample analyte type

    Tipo di dati

    string

    Alias
    UMLS CUI [1,1]
    C0936012
    UMLS CUI [1,2]
    C0520510
    Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
    Descrizione

    Body site

    Tipo di dati

    text

    Alias
    UMLS CUI [1,1]
    C0475445
    UMLS CUI [2,1]
    C0040300
    UMLS CUI [2,2]
    C0200345
    Histological diagnosis
    Descrizione

    Histological type

    Tipo di dati

    text

    Alias
    UMLS CUI [1,1]
    C0679557

    Similar models

    Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

    Name
    genere
    Description | Question | Decode (Coded Value)
    Tipo di dati
    Alias
    Item Group
    pht002815
    SAMPID
    Item
    Sample ID
    string
    C1299222 (UMLS CUI [1,1])
    Item
    Tumor or normal DNA?
    text
    C0205307 (UMLS CUI [1,1])
    C0012854 (UMLS CUI [1,2])
    C0027651 (UMLS CUI [2,1])
    C0012854 (UMLS CUI [2,2])
    Code List
    Tumor or normal DNA?
    CL Item
    Tumor (T)
    C0027651 (UMLS CUI [1,1])
    CL Item
    Normal (N)
    C0205307 (UMLS CUI [1,1])
    Sample analyte type
    Item
    Material used for analysis (DNA, RNA etc.)
    string
    C0936012 (UMLS CUI [1,1])
    C0520510 (UMLS CUI [1,2])
    Body site
    Item
    Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
    text
    C0475445 (UMLS CUI [1,1])
    C0040300 (UMLS CUI [2,1])
    C0200345 (UMLS CUI [2,2])
    Item
    Histological diagnosis
    text
    C0679557 (UMLS CUI [1,1])
    Code List
    Histological diagnosis
    CL Item
    Splenic marginal zone lymphoma (SMZL)
    C0349632 (UMLS CUI [1,1])
    CL Item
    not applicable (if normal DNA) (NA)
    C1272460 (UMLS CUI [1,1])
    C0205307 (UMLS CUI [1,2])
    C0012854 (UMLS CUI [1,3])

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