0 Evaluaciones

ID

45473

Descripción

Principal Investigator: Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA MeSH: Lymphoma, Non-Hodgkin,Lymphoma, B-Cell https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000502 Splenic Marginal Zone Lymphoma (SMZL) is a B-cell malignancy of unknown pathogenesis and thus orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis of 8 paired tumor-normal DNAs from patients with SMZL, we show that the typical SMZL exome carries ~30 genetic alterations. Targeted resequencing of selected candidates in an extended panel of 40-117 samples revealed activating mutations of NOTCH2, a gene required for marginal-zone (MZ) development, as the most frequent and SMZL-specific lesion, accounting for approximately 20% of cases. Additional altered genes suggest that deregulation of signaling pathways normally involved in MZ development (NOTCH, NF-kappa B, and B-cell receptor) represents a critical event in SMZL pathogenesis. These findings have direct implications for the treatment of SMZL patients since drugs are available which can target NOTCH as well as other pathways deregulated in this disease.

Link

dbGap study = phs000502

Palabras clave

  1. 31/10/22 31/10/22 - Tabea Kampen
  2. 13/12/22 13/12/22 - Kristina Keller
Titular de derechos de autor

Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA

Subido en

13 de diciembre de 2022

DOI

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Licencia

Creative Commons BY 4.0

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    dbGaP phs000502 Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

    Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

    pht002815
    Descripción

    pht002815

    Sample ID
    Descripción

    SAMPID

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C1299222 (Sample identification number)
    SNOMED
    372274003
    Tumor or normal DNA?
    Descripción

    tumor_normal

    Tipo de datos

    text

    Alias
    UMLS CUI [1,1]
    C0205307 (Normal)
    SNOMED
    17621005
    LOINC
    LP15963-9
    UMLS CUI [1,2]
    C0012854 (DNA)
    SNOMED
    24851008
    LOINC
    LP32416-7
    UMLS CUI [2,1]
    C0027651 (Neoplasms)
    SNOMED
    108369006
    UMLS CUI [2,2]
    C0012854 (DNA)
    SNOMED
    24851008
    LOINC
    LP32416-7
    Material used for analysis (DNA, RNA etc.)
    Descripción

    Sample analyte type

    Tipo de datos

    string

    Alias
    UMLS CUI [1,1]
    C0936012 (Analysis)
    UMLS CUI [1,2]
    C0520510 (Materials)
    SNOMED
    260769002
    Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
    Descripción

    Body site

    Tipo de datos

    text

    Alias
    UMLS CUI [1,1]
    C0475445 (Tumor site)
    SNOMED
    263591006
    LOINC
    MTHU015562
    UMLS CUI [2,1]
    C0040300 (Body tissue)
    SNOMED
    85756007
    LOINC
    LP7641-6
    UMLS CUI [2,2]
    C0200345 (Specimen Collection)
    SNOMED
    17636008
    Histological diagnosis
    Descripción

    Histological type

    Tipo de datos

    text

    Alias
    UMLS CUI [1,1]
    C0679557 (histological diagnosis)

    Similar models

    Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

    Name
    Tipo
    Description | Question | Decode (Coded Value)
    Tipo de datos
    Alias
    Item Group
    pht002815
    SAMPID
    Item
    Sample ID
    string
    C1299222 (UMLS CUI [1,1])
    Item
    Tumor or normal DNA?
    text
    C0205307 (UMLS CUI [1,1])
    C0012854 (UMLS CUI [1,2])
    C0027651 (UMLS CUI [2,1])
    C0012854 (UMLS CUI [2,2])
    Code List
    Tumor or normal DNA?
    CL Item
    Tumor (T)
    C0027651 (UMLS CUI [1,1])
    CL Item
    Normal (N)
    C0205307 (UMLS CUI [1,1])
    Sample analyte type
    Item
    Material used for analysis (DNA, RNA etc.)
    string
    C0936012 (UMLS CUI [1,1])
    C0520510 (UMLS CUI [1,2])
    Body site
    Item
    Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
    text
    C0475445 (UMLS CUI [1,1])
    C0040300 (UMLS CUI [2,1])
    C0200345 (UMLS CUI [2,2])
    Item
    Histological diagnosis
    text
    C0679557 (UMLS CUI [1,1])
    Code List
    Histological diagnosis
    CL Item
    Splenic marginal zone lymphoma (SMZL)
    C0349632 (UMLS CUI [1,1])
    CL Item
    not applicable (if normal DNA) (NA)
    C1272460 (UMLS CUI [1,1])
    C0205307 (UMLS CUI [1,2])
    C0012854 (UMLS CUI [1,3])

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