ID

45473

Descrição

Principal Investigator: Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA MeSH: Lymphoma, Non-Hodgkin,Lymphoma, B-Cell https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000502 Splenic Marginal Zone Lymphoma (SMZL) is a B-cell malignancy of unknown pathogenesis and thus orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis of 8 paired tumor-normal DNAs from patients with SMZL, we show that the typical SMZL exome carries ~30 genetic alterations. Targeted resequencing of selected candidates in an extended panel of 40-117 samples revealed activating mutations of NOTCH2, a gene required for marginal-zone (MZ) development, as the most frequent and SMZL-specific lesion, accounting for approximately 20% of cases. Additional altered genes suggest that deregulation of signaling pathways normally involved in MZ development (NOTCH, NF-kappa B, and B-cell receptor) represents a critical event in SMZL pathogenesis. These findings have direct implications for the treatment of SMZL patients since drugs are available which can target NOTCH as well as other pathways deregulated in this disease.

Link

dbGap study = phs000502

Palavras-chave

  1. 31/10/2022 31/10/2022 - Tabea Kampen
  2. 13/12/2022 13/12/2022 - Kristina Keller
Titular dos direitos

Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA

Transferido a

13 de dezembro de 2022

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000502 Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

pht002815
Descrição

pht002815

Sample ID
Descrição

SAMPID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C1299222
Tumor or normal DNA?
Descrição

tumor_normal

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0205307
UMLS CUI [1,2]
C0012854
UMLS CUI [2,1]
C0027651
UMLS CUI [2,2]
C0012854
Material used for analysis (DNA, RNA etc.)
Descrição

Sample analyte type

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0936012
UMLS CUI [1,2]
C0520510
Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
Descrição

Body site

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0475445
UMLS CUI [2,1]
C0040300
UMLS CUI [2,2]
C0200345
Histological diagnosis
Descrição

Histological type

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0679557

Similar models

Sample ID, analyte type, tumor status, body site where sample was collected, and histological diagnosis of tumors obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht002815
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
Item
Tumor or normal DNA?
text
C0205307 (UMLS CUI [1,1])
C0012854 (UMLS CUI [1,2])
C0027651 (UMLS CUI [2,1])
C0012854 (UMLS CUI [2,2])
Code List
Tumor or normal DNA?
CL Item
Tumor (T)
C0027651 (UMLS CUI [1,1])
CL Item
Normal (N)
C0205307 (UMLS CUI [1,1])
Sample analyte type
Item
Material used for analysis (DNA, RNA etc.)
string
C0936012 (UMLS CUI [1,1])
C0520510 (UMLS CUI [1,2])
Body site
Item
Tumor localization or tissue from which material was extracted [frozen spleen biopsy; peripheral blood granulocytes; saliva]
text
C0475445 (UMLS CUI [1,1])
C0040300 (UMLS CUI [2,1])
C0200345 (UMLS CUI [2,2])
Item
Histological diagnosis
text
C0679557 (UMLS CUI [1,1])
Code List
Histological diagnosis
CL Item
Splenic marginal zone lymphoma (SMZL)
C0349632 (UMLS CUI [1,1])
CL Item
not applicable (if normal DNA) (NA)
C1272460 (UMLS CUI [1,1])
C0205307 (UMLS CUI [1,2])
C0012854 (UMLS CUI [1,3])

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