ID

45473

Beschrijving

Principal Investigator: Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA MeSH: Lymphoma, Non-Hodgkin,Lymphoma, B-Cell https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000502 Splenic Marginal Zone Lymphoma (SMZL) is a B-cell malignancy of unknown pathogenesis and thus orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis of 8 paired tumor-normal DNAs from patients with SMZL, we show that the typical SMZL exome carries ~30 genetic alterations. Targeted resequencing of selected candidates in an extended panel of 40-117 samples revealed activating mutations of NOTCH2, a gene required for marginal-zone (MZ) development, as the most frequent and SMZL-specific lesion, accounting for approximately 20% of cases. Additional altered genes suggest that deregulation of signaling pathways normally involved in MZ development (NOTCH, NF-kappa B, and B-cell receptor) represents a critical event in SMZL pathogenesis. These findings have direct implications for the treatment of SMZL patients since drugs are available which can target NOTCH as well as other pathways deregulated in this disease.

Link

dbGap study = phs000502

Trefwoorden

  1. 31-10-22 31-10-22 - Tabea Kampen
  2. 13-12-22 13-12-22 - Kristina Keller
Houder van rechten

Laura Pasqualucci, MD, Institute for Cancer Genetics, Columbia University, New York, NY, USA

Geüploaded op

13 december 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000502 Genome-Wide Analysis of Splenic Marginal Zone Lymphoma

Sample ID, subject ID and sample use variables obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

pht002814
Beschrijving

pht002814

De-identified subject's ID
Beschrijving

SUBJID

Datatype

string

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C1299222
Sample use. SNP_Array: SNP genotypes obtained using standard or custom microarrays; WES_SRA: Whole exome sequencing data available through SRA
Beschrijving

SAMPLE_USE

Datatype

text

Alias
UMLS CUI [1,1]
C0200345
UMLS CUI [1,2]
C1524063
UMLS CUI [2,1]
C3897601
UMLS CUI [3,1]
C3640077
UMLS CUI [3,2]
C3506382

Similar models

Sample ID, subject ID and sample use variables obtained from participants with splenic marginal zone lymphoma and involved in the "Genome-Wide Analysis of Splenic Marginal Zone Lymphoma" project.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002814
SUBJID
Item
De-identified subject's ID
string
C2348585 (UMLS CUI [1,1])
SAMPID
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
SAMPLE_USE
Item
Sample use. SNP_Array: SNP genotypes obtained using standard or custom microarrays; WES_SRA: Whole exome sequencing data available through SRA
text
C0200345 (UMLS CUI [1,1])
C1524063 (UMLS CUI [1,2])
C3897601 (UMLS CUI [2,1])
C3640077 (UMLS CUI [3,1])
C3506382 (UMLS CUI [3,2])

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