ID

45466

Descrizione

Principal Investigator: Matthew Hsieh, MD, National Institutes of Health, NHLBI and NIDDK, Bethesda, MD, USA MeSH: Neutropenia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000507 Benign ethnic neutropenia (BEN) is a clinical condition more commonly observed in African-Americans. It is characterized by a relative reduction in neutrophil count by about 1000 cells per microliter, leading to a decrease in total leukocyte count by similar decrement. Previous reports of this condition showed that there was neither higher frequency nor increased severity of infections in affected individuals. Bone marrow examinations showed normal white cell maturation; and ex vivo culture of marrow cells showed low normal or slightly reduced number of myeloid colonies. Under physiologic stress, the increases in neutrophil and leukocyte counts of BEN individuals are slightly lower, compared to normal African-Americans or Caucasians. These clinical observations suggest that BEN results from a lower 'set point' for cell number in the marrow. Additionally, case reports of familial BEN, the persistence of BEN over many decades in the US, UK, and Africa, and the recent report of Duffy antigen and chemokine receptor (DARC) being associated with neutropenia, all suggest a strong genetic association to neutropenia/leukopenia. Our initial look into microarray analyses in a pilot trial of subjects showed that there were no significant differences in mRNA signals between BEN and normal subjects. Therefore, we are now proposing a larger study, utilizing Illumina Omni Express chips, to look for genetic associations. We have partnered with the Reasons for Geographic and Racial Differences in Stroke study (REGARDS), where nearly half of the cohort are African-Americans. This will be one of the few GWAS being performed in only African-Americans, and will provide valuable genetic information to link with neutropenia and possibly other conditions/diseases. Genotyping was performed by the Johns Hopkins University Center for Inherited Disease Research (CIDR). Quality control of the genotypic and phenotypic data was performed through a collaboration between CIDR and the Genetics Coordinating Center, Department of Biostatistics at the University of Washington, which is funded by a federal contract supported by 14 NIH Institutes (HHSN268200782096C).

collegamento

dbGap study = phs000507

Keywords

  1. 10/14/22 10/14/22 - Chiara Middel
  2. 12/13/22 12/13/22 - Kristina Keller
Titolare del copyright

Matthew Hsieh, MD, National Institutes of Health, NHLBI and NIDDK, Bethesda, MD, USA

Caricato su

December 13, 2022

DOI

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Licenza

Creative Commons BY 4.0

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dbGaP phs000507 Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans

Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, subject source, and subject source ID of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    3. Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.
    4. Sample ID, subject ID, sample source, sample source ID, and sample use variables obtained from participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    5. Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    6. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
pht002929
Descrizione

pht002929

White blood cell count
Descrizione

WBC

Tipo di dati

float

Unità di misura
  • x 10e3 cells/uL or x 10e9 cells/L
Alias
UMLS CUI [1,1]
C0023508
x 10e3 cells/uL or x 10e9 cells/L
Sex of participant
Descrizione

GENDER

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0079399
Age of the participant at time of participant interview
Descrizione

Age

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0021822
Smoking status at the time of participant interview
Descrizione

Smoke

Tipo di dati

string

Alias
UMLS CUI [1,1]
C1519386
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0021822
Did participant have a history of stroke?
Descrizione

Stroke_SR

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0262926
UMLS CUI [1,2]
C0038454
Did participant have a history of transient ischemic attack?
Descrizione

TIA_SR

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0262926
UMLS CUI [1,2]
C0007787
Serum albumin
Descrizione

Albumin_serum

Tipo di dati

float

Unità di misura
  • grams/deciLiter
Alias
UMLS CUI [1,1]
C0201838
grams/deciLiter
Serum total cholesterol
Descrizione

Cholest

Tipo di dati

text

Unità di misura
  • milligrams/deciLiter
Alias
UMLS CUI [1,1]
C1445957
milligrams/deciLiter
Serum high density lipoprotein
Descrizione

Hdl

Tipo di dati

text

Unità di misura
  • milligrams/deciLiter
Alias
UMLS CUI [1,1]
C0392885
milligrams/deciLiter
Serum low density lipoprotein
Descrizione

Ldl

Tipo di dati

text

Unità di misura
  • milligrams/deciLiter
Alias
UMLS CUI [1,1]
C0202117
milligrams/deciLiter
Platelet count
Descrizione

Pltc

Tipo di dati

text

Unità di misura
  • x 10e3 cells/uL or x 10e9 cells/L
Alias
UMLS CUI [1,1]
C0032181
x 10e3 cells/uL or x 10e9 cells/L
Serum triglycerides
Descrizione

Trigly

Tipo di dati

text

Unità di misura
  • milligrams/deciLiter
Alias
UMLS CUI [1,1]
C0202236
milligrams/deciLiter
Serum c-reactive protein
Descrizione

Crp

Tipo di dati

float

Unità di misura
  • milligrams/Liter
Alias
UMLS CUI [1,1]
C0201657
milligrams/Liter
State in the US where the participant resides
Descrizione

State

Tipo di dati

text

Alias
UMLS CUI [1,1]
C1830433
Did participant consent to private research
Descrizione

DNAPrivResearch

Tipo di dati

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C4520857
UMLS CUI [1,3]
C0035168
De-identified subject ID
Descrizione

SUBJECT_ID

Tipo di dati

text

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C4684638

Similar models

Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, subject source, and subject source ID of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    3. Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.
    4. Sample ID, subject ID, sample source, sample source ID, and sample use variables obtained from participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    5. Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    6. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
pht002929
WBC
Item
White blood cell count
float
C0023508 (UMLS CUI [1,1])
Item
Sex of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Sex of participant
CL Item
Female (F)
CL Item
Male (M)
Age
Item
Age of the participant at time of participant interview
text
C0001779 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0021822 (UMLS CUI [1,3])
Smoke
Item
Smoking status at the time of participant interview
string
C1519386 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0021822 (UMLS CUI [1,3])
Item
Did participant have a history of stroke?
text
C0262926 (UMLS CUI [1,1])
C0038454 (UMLS CUI [1,2])
Code List
Did participant have a history of stroke?
CL Item
No (N)
CL Item
Yes (Y)
Item
Did participant have a history of transient ischemic attack?
text
C0262926 (UMLS CUI [1,1])
C0007787 (UMLS CUI [1,2])
Code List
Did participant have a history of transient ischemic attack?
CL Item
No (N)
CL Item
Yes (Y)
Albumin_serum
Item
Serum albumin
float
C0201838 (UMLS CUI [1,1])
Cholest
Item
Serum total cholesterol
text
C1445957 (UMLS CUI [1,1])
Hdl
Item
Serum high density lipoprotein
text
C0392885 (UMLS CUI [1,1])
Ldl
Item
Serum low density lipoprotein
text
C0202117 (UMLS CUI [1,1])
Pltc
Item
Platelet count
text
C0032181 (UMLS CUI [1,1])
Trigly
Item
Serum triglycerides
text
C0202236 (UMLS CUI [1,1])
Crp
Item
Serum c-reactive protein
float
C0201657 (UMLS CUI [1,1])
Item
State in the US where the participant resides
text
C1830433 (UMLS CUI [1,1])
Code List
State in the US where the participant resides
CL Item
Alabama (AL)
CL Item
Arkansas (AR)
CL Item
California (CA)
CL Item
Colorado (CO)
CL Item
Washington, DC (DC)
CL Item
Delaware (DE)
CL Item
Florida (FL)
CL Item
Georgia (GA)
CL Item
Iowa (IA)
CL Item
Illinois (IL)
CL Item
Indiana (IN)
CL Item
Kansas (KS)
CL Item
Kentucky (KY)
CL Item
Louisiana (LA)
CL Item
Massachusetts (MA)
CL Item
Maryland (MD)
CL Item
Michigan (MI)
CL Item
Minnesota (MN)
CL Item
Missouri (MO)
CL Item
Mississippi (MS)
CL Item
North Carolina (NC)
CL Item
Nebraska (NE)
CL Item
New Jersey (NJ)
CL Item
New York (NY)
CL Item
Ohio (OH)
CL Item
Oklahoma (OK)
CL Item
Pennsylvania (PA)
CL Item
South Carolina (SC)
CL Item
Tennessee (TN)
CL Item
Texas (TX)
CL Item
Virginia (VA)
CL Item
Wisconsin (WI)
Item
Did participant consent to private research
text
C0021430 (UMLS CUI [1,1])
C4520857 (UMLS CUI [1,2])
C0035168 (UMLS CUI [1,3])
Code List
Did participant consent to private research
CL Item
no (N)
CL Item
yes (Y)
SUBJECT_ID
Item
De-identified subject ID
text
C2348585 (UMLS CUI [1,1])
C4684638 (UMLS CUI [1,2])

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