ID

45466

Beschrijving

Principal Investigator: Matthew Hsieh, MD, National Institutes of Health, NHLBI and NIDDK, Bethesda, MD, USA MeSH: Neutropenia https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000507 Benign ethnic neutropenia (BEN) is a clinical condition more commonly observed in African-Americans. It is characterized by a relative reduction in neutrophil count by about 1000 cells per microliter, leading to a decrease in total leukocyte count by similar decrement. Previous reports of this condition showed that there was neither higher frequency nor increased severity of infections in affected individuals. Bone marrow examinations showed normal white cell maturation; and ex vivo culture of marrow cells showed low normal or slightly reduced number of myeloid colonies. Under physiologic stress, the increases in neutrophil and leukocyte counts of BEN individuals are slightly lower, compared to normal African-Americans or Caucasians. These clinical observations suggest that BEN results from a lower 'set point' for cell number in the marrow. Additionally, case reports of familial BEN, the persistence of BEN over many decades in the US, UK, and Africa, and the recent report of Duffy antigen and chemokine receptor (DARC) being associated with neutropenia, all suggest a strong genetic association to neutropenia/leukopenia. Our initial look into microarray analyses in a pilot trial of subjects showed that there were no significant differences in mRNA signals between BEN and normal subjects. Therefore, we are now proposing a larger study, utilizing Illumina Omni Express chips, to look for genetic associations. We have partnered with the Reasons for Geographic and Racial Differences in Stroke study (REGARDS), where nearly half of the cohort are African-Americans. This will be one of the few GWAS being performed in only African-Americans, and will provide valuable genetic information to link with neutropenia and possibly other conditions/diseases. Genotyping was performed by the Johns Hopkins University Center for Inherited Disease Research (CIDR). Quality control of the genotypic and phenotypic data was performed through a collaboration between CIDR and the Genetics Coordinating Center, Department of Biostatistics at the University of Washington, which is funded by a federal contract supported by 14 NIH Institutes (HHSN268200782096C).

Link

dbGap study = phs000507

Trefwoorden

  1. 14-10-22 14-10-22 - Chiara Middel
  2. 13-12-22 13-12-22 - Kristina Keller
Houder van rechten

Matthew Hsieh, MD, National Institutes of Health, NHLBI and NIDDK, Bethesda, MD, USA

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13 december 2022

DOI

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Creative Commons BY 4.0

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dbGaP phs000507 Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans

Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, subject source, and subject source ID of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    3. Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.
    4. Sample ID, subject ID, sample source, sample source ID, and sample use variables obtained from participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    5. Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    6. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
pht002927
Beschrijving

pht002927

Father's GENEVA ID
Beschrijving

FATHER

Datatype

text

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0015671
Mother's GENEVA ID
Beschrijving

MOTHER

Datatype

text

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0026591
Sex
Beschrijving

SEX

Datatype

text

Alias
UMLS CUI [1,1]
C0079399
Family ID
Beschrijving

FAMILY_ID

Datatype

text

Alias
UMLS CUI [1,1]
C0015576
UMLS CUI [1,2]
C2348585
GENEVA ID
Beschrijving

SUBJECT_ID

Datatype

text

Alias
UMLS CUI [1,1]
C2348585

Similar models

Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.

  1. StudyEvent: SEV1
    1. Eligibility Criteria
    2. Subject ID, consent group, subject source, and subject source ID of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    3. Subject ID, family ID, mother ID, father ID, and sex of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs old) from the REGARDS" project.
    4. Sample ID, subject ID, sample source, sample source ID, and sample use variables obtained from participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    5. Subject ID, age, gender, if participant consent to private research, State in the US where the participant resides, participant history of stroke, participant history of transient ischemic attack, cholesterol, triglycerides, C-reactive protein, blood cell count, and smoking of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
    6. Sample ID, analyte type, body site where sample was obtained, and tumor status of sample of participants with or without benign neutropenia and involved in the "NHLBI and NIDDK Sponsored GWAS in Benign Ethnic Neutropenia/Leukopenia (BEN) in African-Americans (Age >45 yrs Old) from the REGARDS" project.
Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002927
FATHER
Item
Father's GENEVA ID
text
C2348585 (UMLS CUI [1,1])
C0015671 (UMLS CUI [1,2])
MOTHER
Item
Mother's GENEVA ID
text
C2348585 (UMLS CUI [1,1])
C0026591 (UMLS CUI [1,2])
Item
Sex
text
C0079399 (UMLS CUI [1,1])
Code List
Sex
CL Item
male (1)
CL Item
female (2)
FAMILY_ID
Item
Family ID
text
C0015576 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
SUBJECT_ID
Item
GENEVA ID
text
C2348585 (UMLS CUI [1,1])

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