ID

45439

Descrição

Principal Investigator: Keith L. Ligon, MD, PhD, Dana-Farber Cancer Institute, Boston Children's Hospital, MA, USA MeSH: Astrocytoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000614 Pediatric low-grade gliomas (PLGGs) are among the most common solid tumors in children but, apart from mutations or duplications in the BRAF kinase in specific subclasses, few genetic driver events are known. Diffuse PLGGs compose a set of uncommon subtypes that exhibit invasive growth and are therefore especially challenging clinically. These tumors are particularly poorly understood. We performed high-resolution copy-number analysis of 44 diffuse PLGGs to identify recurrent alterations. Diffuse PLGGs exhibited fewer such alterations than adult low-grade gliomas, but we identified several significantly recurrent events. The most significant event, 8q13.1 gains, was observed in 28% of diffuse astrocytoma WHO grade II (DA2) and resulted in partial duplication of the transcription factor MYBL1 with truncation of its C-terminal negative-regulatory domain. A similar recurrent deletion-truncation breakpoint was identified in two angiocentric gliomas in the related gene MYB on 6q23.3. Whole genome sequencing of a MYBL1-rearranged diffuse astrocytoma grade II demonstrated MYBL1 tandem duplication and few other events. Two truncated MYBL1 transcripts identified in this tumor induced anchorage-independent growth when expressed in 3T3 cells and tumor formation in nude mice. Truncated transcripts were also expressed in two additional tumors with MYBL1 partial duplication. Our results define clinically relevant molecular subclasses of diffuse PLGGs and highlight a potential role for the MYB family in the biology of low-grade gliomas. "Reprinted from www.pnas.org/cgi/doi/10.1073/pnas.1300252110 with permission from PNAS."

Link

dbGaP-study=phs000614

Palavras-chave

  1. 04/12/2022 04/12/2022 - Chiara Middel
Titular dos direitos

Keith L. Ligon, MD, PhD, Dana-Farber Cancer Institute, Boston Children's Hospital, MA, USA

Transferido a

4 de dezembro de 2022

DOI

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Licença

Creative Commons BY 4.0

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dbGaP phs000614 Genomic Analysis of Pediatric Low Grade Gliomas

Sample ID, analyte type, tumor status of samples [tumor, normal tissue], histological type of samples, body site where sample was obtained, and if sample was obtained from recurrent tumor of participant with low grade glioma and involved in the "Genomic Analysis of Pediatric Low Grade Gliomas" project.

pht003291
Descrição

pht003291

Alias
UMLS CUI [1,1]
C3846158
De-identified sample ID
Descrição

SAMPID

Tipo de dados

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Sample content analyzed
Descrição

ANALYTE_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0936012
UMLS CUI [1,2]
C2347026
Tumor status
Descrição

IS_TUMOR

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0475752
WHO Tumor grade of sample
Descrição

TUMOR_GRADE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0919553
Cell or tissue type or subtype of sample
Descrição

HISTOLOGICAL_TYPE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C2347026
UMLS CUI [1,2]
C0007634
UMLS CUI [1,3]
C0332307
UMLS CUI [2,1]
C2347026
UMLS CUI [2,2]
C0007634
UMLS CUI [2,3]
C0449560
UMLS CUI [3,1]
C1292533
UMLS CUI [3,2]
C0332307
UMLS CUI [4,1]
C1292533
UMLS CUI [4,2]
C0449560
Body site where sample was collected
Descrição

BODY_SITE

Tipo de dados

string

Alias
UMLS CUI [1,1]
C0449705
Whether the sample is from a recurrent tumor
Descrição

IS_RECURRENT

Tipo de dados

text

Alias
UMLS CUI [1,1]
C0521158

Similar models

Sample ID, analyte type, tumor status of samples [tumor, normal tissue], histological type of samples, body site where sample was obtained, and if sample was obtained from recurrent tumor of participant with low grade glioma and involved in the "Genomic Analysis of Pediatric Low Grade Gliomas" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de dados
Alias
Item Group
pht003291
C3846158 (UMLS CUI [1,1])
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Sample content analyzed
string
C0936012 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
TUMOR_GRADE
Item
WHO Tumor grade of sample
string
C0919553 (UMLS CUI [1,1])
HISTOLOGICAL_TYPE
Item
Cell or tissue type or subtype of sample
string
C2347026 (UMLS CUI [1,1])
C0007634 (UMLS CUI [1,2])
C0332307 (UMLS CUI [1,3])
C2347026 (UMLS CUI [2,1])
C0007634 (UMLS CUI [2,2])
C0449560 (UMLS CUI [2,3])
C1292533 (UMLS CUI [3,1])
C0332307 (UMLS CUI [3,2])
C1292533 (UMLS CUI [4,1])
C0449560 (UMLS CUI [4,2])
BODY_SITE
Item
Body site where sample was collected
string
C0449705 (UMLS CUI [1,1])
Item
Whether the sample is from a recurrent tumor
text
C0521158 (UMLS CUI [1,1])
Code List
Whether the sample is from a recurrent tumor
CL Item
Is a primarily resected tumor (N)
CL Item
not applicable (NA)
C1272460 (UMLS CUI [1,1])
CL Item
Is a recurrent tumor (Y)

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