ID

45439

Description

Principal Investigator: Keith L. Ligon, MD, PhD, Dana-Farber Cancer Institute, Boston Children's Hospital, MA, USA MeSH: Astrocytoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000614 Pediatric low-grade gliomas (PLGGs) are among the most common solid tumors in children but, apart from mutations or duplications in the BRAF kinase in specific subclasses, few genetic driver events are known. Diffuse PLGGs compose a set of uncommon subtypes that exhibit invasive growth and are therefore especially challenging clinically. These tumors are particularly poorly understood. We performed high-resolution copy-number analysis of 44 diffuse PLGGs to identify recurrent alterations. Diffuse PLGGs exhibited fewer such alterations than adult low-grade gliomas, but we identified several significantly recurrent events. The most significant event, 8q13.1 gains, was observed in 28% of diffuse astrocytoma WHO grade II (DA2) and resulted in partial duplication of the transcription factor MYBL1 with truncation of its C-terminal negative-regulatory domain. A similar recurrent deletion-truncation breakpoint was identified in two angiocentric gliomas in the related gene MYB on 6q23.3. Whole genome sequencing of a MYBL1-rearranged diffuse astrocytoma grade II demonstrated MYBL1 tandem duplication and few other events. Two truncated MYBL1 transcripts identified in this tumor induced anchorage-independent growth when expressed in 3T3 cells and tumor formation in nude mice. Truncated transcripts were also expressed in two additional tumors with MYBL1 partial duplication. Our results define clinically relevant molecular subclasses of diffuse PLGGs and highlight a potential role for the MYB family in the biology of low-grade gliomas. "Reprinted from www.pnas.org/cgi/doi/10.1073/pnas.1300252110 with permission from PNAS."

Lien

dbGaP-study=phs000614

Mots-clés

  1. 04/12/2022 04/12/2022 - Chiara Middel
Détendeur de droits

Keith L. Ligon, MD, PhD, Dana-Farber Cancer Institute, Boston Children's Hospital, MA, USA

Téléchargé le

4 décembre 2022

DOI

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Licence

Creative Commons BY 4.0

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dbGaP phs000614 Genomic Analysis of Pediatric Low Grade Gliomas

Subject ID, age, and sex of participant with low grade glioma and involved in the "Genomic Analysis of Pediatric Low Grade Gliomas" project.

pht003290
Description

pht003290

Alias
UMLS CUI [1,1]
C3846158
De-identified subject ID
Description

SUBJID

Type de données

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C2348585
Age at surgical resection
Description

age

Type de données

text

Unités de mesure
  • Year
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C0011008
UMLS CUI [1,3]
C0543467
Year
Gender of participant
Description

sex

Type de données

text

Alias
UMLS CUI [1,1]
C0079399

Similar models

Subject ID, age, and sex of participant with low grade glioma and involved in the "Genomic Analysis of Pediatric Low Grade Gliomas" project.

Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht003290
C3846158 (UMLS CUI [1,1])
SUBJID
Item
De-identified subject ID
string
C4684638 (UMLS CUI [1,1])
C2348585 (UMLS CUI [1,2])
age
Item
Age at surgical resection
text
C0001779 (UMLS CUI [1,1])
C0011008 (UMLS CUI [1,2])
C0543467 (UMLS CUI [1,3])
Item
Gender of participant
text
C0079399 (UMLS CUI [1,1])
Code List
Gender of participant
CL Item
Female (F)
C0086287 (UMLS CUI [1,1])
CL Item
Male (M)
C0086582 (UMLS CUI [1,1])

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