ID

45415

Description

Principal Investigator: Christopher A. Walsh, PhD, Children's Hospital Corporation, Boston, MA, USA MeSH: Autism Spectrum Disorder https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000639 The goal of this proposal is to bring together the power of 1) whole exome sequencing, 2) homozygosity mapping in consanguineous families, 3) genome-wide maps of neuronal transcription in response to neuronal activity, and 4) genome-wide maps of the binding sites of factors that regulate this transcription to generate and annotate a catalog of ASD-associated variants. The consanguineous families are already enrolled in research, and have been phenotyped. The neuronal transcription and binding site maps will be developed by the Greenberg Lab at Harvard Medical School. The whole exome sequencing will be done at the Broad Institute, and the Walsh lab at Children's Hospital will validate the results and analyze the variant data.

Lien

dbGaP study = phs000639

Mots-clés

  1. 23/11/2022 23/11/2022 - Simon Heim
Détendeur de droits

Christopher A. Walsh, PhD, Children's Hospital Corporation, Boston, MA, USA

Téléchargé le

23 novembre 2022

DOI

Pour une demande vous connecter.

Licence

Creative Commons BY 4.0

Modèle Commentaires :

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dbGaP phs000639 Human Autism Genetics and Activity Dependent Gene Activation

This subject consent data table contains subject IDs, consent group information, subject aliases, and affection status of autism spectrum disorders (ASD).

pht004778
Description

pht004778

Alias
UMLS CUI [1,1]
C3846158
Subject ID
Description

SUBJECT_ID

Type de données

string

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Description

CONSENT

Type de données

text

Alias
UMLS CUI [1,1]
C0021430
Source repository where subjects originate
Description

SUBJECT_SOURCE

Type de données

string

Alias
UMLS CUI [1,1]
C3847505
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0681850
Subject ID used in the Source Repository
Description

SOURCE_SUBJECT_ID

Type de données

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C3847505
UMLS CUI [1,3]
C0449416
Case control status of the subject
Description

AFFECTION_STATUS

Type de données

text

Alias
UMLS CUI [1,1]
C3274646

Similar models

This subject consent data table contains subject IDs, consent group information, subject aliases, and affection status of autism spectrum disorders (ASD).

Name
Type
Description | Question | Decode (Coded Value)
Type de données
Alias
Item Group
pht004778
C3846158 (UMLS CUI [1,1])
SUBJECT_ID
Item
Subject ID
string
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
Code List
Consent group as determined by DAC
CL Item
Subjects did not participate in the study, did not complete a consent document and are included only for the pedigree structure and/or genotype controls, such as HapMap subjects (0)
CL Item
Disease-Specific (Autism Spectrum Disorder) (DS-ASD) (2)
SUBJECT_SOURCE
Item
Source repository where subjects originate
string
C3847505 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0681850 (UMLS CUI [1,3])
SOURCE_SUBJECT_ID
Item
Subject ID used in the Source Repository
string
C2348585 (UMLS CUI [1,1])
C3847505 (UMLS CUI [1,2])
C0449416 (UMLS CUI [1,3])
Item
Case control status of the subject
text
C3274646 (UMLS CUI [1,1])
Code List
Case control status of the subject
CL Item
AUTISM SPECTRUM AFFECTED (1)
CL Item
AUTISM SPECTRUM MILDLY AFFECTED (2)
CL Item
AUTISM SPECTRUM SEVERELY AFFECTED (3)
CL Item
NEUROLOGICAL CONTROL (5)
CL Item
PARENTAL CONTROL (7)
CL Item
SIBLING CONTROL (8)

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