ID

45367

Beschrijving

Principal Investigator: Winnie S. Liang, PhD, Translational Genomics Research Institute, Phoenix, AZ, USA MeSH: Pancreatic Neoplasms,Carcinoma https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000550 In this study, we whole genome sequenced tumor/normal pairs from three pancreatic adenocarcinoma patients to separately characterize each patient with respect to somatic alterations. For 2 patients for whom tumor RNA was available, we also performed RNA sequencing to evaluate gene expression changes. While additional sequencing is needed to improve our understanding of the disease, the information acquired from this study contributes to our knowledge base on pancreatic cancer and helps to establish a foundation for identifying and developing more efficacious treatments for patients.

Link

dbGap-study=phs000550

Trefwoorden

  1. 04-11-22 04-11-22 - Chiara Middel
Houder van rechten

Winnie S. Liang, PhD, Translational Genomics Research Institute, Phoenix, AZ, USA

Geüploaded op

4 november 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000550 Characterization of Pancreatic Adenocarcinoma Patients Using NGS

Sample ID, body site where sample was collected, analyte type of samples, tumor status, primary tumor, metastasis, or transformed cell line, primary tumor location, tumor stage of samples, and type of tumor treatment for samples obtained from participants with pancreatic adenocarcinoma and involved in the "Genome-Wide Characterization of Pancreatic Adenocarcinoma Patients Using Next Generation Sequencing" project.

pht003130
Beschrijving

pht003130

De-identified sample ID
Beschrijving

SAMPID

Datatype

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Beschrijving

BODY_SITE

Datatype

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0449705
Analyte Type
Beschrijving

ANALYTE_TYPE

Datatype

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Beschrijving

IS_TUMOR

Datatype

text

Alias
UMLS CUI [1,1]
C0475752
Primary tumor, metastasis, or transformed cell line
Beschrijving

PRIMARY_METASTATIC_TUMOR

Datatype

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [1,2]
C0027627
UMLS CUI [1,3]
C0007601
Primary tumor location
Beschrijving

PRIMARY_TUMOR_LOCATION

Datatype

string

Alias
UMLS CUI [1,1]
C0677930
UMLS CUI [1,2]
C0450429
Tumor stage of sample
Beschrijving

TUMOR_STAGE

Datatype

string

Alias
UMLS CUI [1,1]
C1300072
Type of tumor treatment for sample
Beschrijving

TUMOR_TREATMENT

Datatype

string

Alias
UMLS CUI [1,1]
C0332307
UMLS CUI [1,2]
C0087111
UMLS CUI [1,3]
C0027651

Similar models

Sample ID, body site where sample was collected, analyte type of samples, tumor status, primary tumor, metastasis, or transformed cell line, primary tumor location, tumor stage of samples, and type of tumor treatment for samples obtained from participants with pancreatic adenocarcinoma and involved in the "Genome-Wide Characterization of Pancreatic Adenocarcinoma Patients Using Next Generation Sequencing" project.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht003130
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0449705 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte Type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
PRIMARY_METASTATIC_TUMOR
Item
Primary tumor, metastasis, or transformed cell line
string
C0677930 (UMLS CUI [1,1])
C0027627 (UMLS CUI [1,2])
C0007601 (UMLS CUI [1,3])
PRIMARY_TUMOR_LOCATION
Item
Primary tumor location
string
C0677930 (UMLS CUI [1,1])
C0450429 (UMLS CUI [1,2])
TUMOR_STAGE
Item
Tumor stage of sample
string
C1300072 (UMLS CUI [1,1])
TUMOR_TREATMENT
Item
Type of tumor treatment for sample
string
C0332307 (UMLS CUI [1,1])
C0087111 (UMLS CUI [1,2])
C0027651 (UMLS CUI [1,3])

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