ID

45365

Description

Principal Investigator: Sandeep Dave, MD, MS, Duke University, Durham, NC, USA MeSH: Burkitt Lymphoma,Lymphoma, Non-Hodgkin https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000562 Burkitt lymphoma (BL) is characterized by deregulation of *MYC*, but the contribution of other genetic mutations to the disease is largely unknown. We sequenced exomes of 59 BL tumors, 14 of which had paired normal tissue. Our work elucidates commonly occurring gene-coding mutations in Burkitt lymphoma and implicates *ID3* as a novel tumor suppressor gene.

Link

dbGap-study=phs000562

Keywords

  1. 11/4/22 11/4/22 - Chiara Middel
Copyright Holder

Sandeep Dave, MD, MS, Duke University, Durham, NC, USA

Uploaded on

November 4, 2022

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000562 The Genetic Landscape of Mutations in Burkitt Lymphoma

Sample ID, body site where sample was collected, tumor status, histological type of samples, and analyte type of samples obtained from participants with Burkitt lymphoma and involved in the "The Genetic Landscape of Mutations in Burkitt Lymphoma" project.

pht003107
Description

pht003107

De-identified sample ID
Description

SAMPID

Data type

string

Alias
UMLS CUI [1,1]
C4684638
UMLS CUI [1,2]
C1299222
Body site where sample was collected
Description

BODY_SITE

Data type

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0449705
Analyte type
Description

ANALYTE_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C4744818
Tumor status
Description

IS_TUMOR

Data type

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample
Description

HISTOLOGICAL_TYPE

Data type

string

Alias
UMLS CUI [1,1]
C0449475
UMLS CUI [1,2]
C2347026
UMLS CUI [2,1]
C2713035
UMLS CUI [2,2]
C2347026
UMLS CUI [3,1]
C0449560
UMLS CUI [3,2]
C2347026

Similar models

Sample ID, body site where sample was collected, tumor status, histological type of samples, and analyte type of samples obtained from participants with Burkitt lymphoma and involved in the "The Genetic Landscape of Mutations in Burkitt Lymphoma" project.

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
pht003107
SAMPID
Item
De-identified sample ID
string
C4684638 (UMLS CUI [1,1])
C1299222 (UMLS CUI [1,2])
BODY_SITE
Item
Body site where sample was collected
string
C1515974 (UMLS CUI [1,1])
C0449705 (UMLS CUI [1,2])
ANALYTE_TYPE
Item
Analyte type
string
C4744818 (UMLS CUI [1,1])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
Item
Cell or tissue type or subtype of sample
string
C0449475 (UMLS CUI [1,1])
C2347026 (UMLS CUI [1,2])
C2713035 (UMLS CUI [2,1])
C2347026 (UMLS CUI [2,2])
C0449560 (UMLS CUI [3,1])
C2347026 (UMLS CUI [3,2])
Code List
Cell or tissue type or subtype of sample
CL Item
Not applicable (N/A)

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