ID

45301

Description

Principal Investigator: Fergus J. Couch, PhD, Mayo Clinic, Rochester, Minnesota, USA MeSH: Breast Neoplasms,Breast Cancer https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000480 Breast cancer has a significant genetic component. The strongest epidemiologic risk factor is family history of the disease. Familial studies have identified a number of genes contributing to increased risk. Of these, the highly penetrant BRCA1 and BRCA2 genes account for the majority of families in whom disease-causal mutations have been identified. However, mutations in other genes have been associated with predisposition to breast or breast and ovarian cancer including (CHEK2, ATM, PALB2, RAD51C, RAD51D). Together these genes account for less than 20% of excess familial breast cancer risk and do not explain ~50% of high-risk families referred for genetic testing. This significant gap in our understanding of the genetic basis of breast cancer poses a significant barrier to our ability to identify women at increased risk, who would benefit greatly from appropriate clinical management. To identify additional breast cancer predisposition genes whole exome sequencing of familial high-risk breast cancer patients was undertaken. DNA samples from 50 pairs of breast cancer patients from high-risk breast cancer families with no pathogenic mutations in the BRCA1 or BRCA2 breast cancer predisposition genes were subjected to whole exome sequencing. The goal was to select candidate predisposition genes for further validation studies based on sharing of putative protein inactivating mutations among both members of each family and/or the frequency of inactivating mutations among the 50 families.

Link

dbGaP study = phs000480

Keywords

  1. 10/19/22 10/19/22 - Adrian Schulz
Copyright Holder

Fergus J. Couch, PhD, Mayo Clinic, Rochester, Minnesota, USA

Uploaded on

October 19, 2022

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000480 Familial Breast Cancer Study (FBCS)

Eligibility Criteria

Inclusion and exclusion criteria
Description

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
*Inclusion criteria for families:*
Description

Elig.phs000480.v1.p1.1

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
Family history of breast cancer with three or more women diagnosed with breast cancer under age 60 among first and second-degree relatives of probands.
Description

Elig.phs000480.v1.p1.2

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0559119
UMLS CUI [1,3]
C0043210
UMLS CUI [1,4]
C1828181
UMLS CUI [1,5]
C0449788
UMLS CUI [1,6]
C1517194
UMLS CUI [1,7]
C1519210
UMLS CUI [1,8]
C0392760
Clear evidence of Mendelian segregation of disease.
Description

Elig.phs000480.v1.p1.3

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0006142
UMLS CUI [1,3]
C0683231
Germline DNA samples available from at least two second-degree relatives affected with breast cancer under age 60.
Description

Elig.phs000480.v1.p1.4

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0470187
UMLS CUI [1,3]
C2986526
UMLS CUI [1,4]
C1519210
UMLS CUI [1,5]
C0006142
UMLS CUI [1,6]
C1828181
No BRCA1 or BRCA2 pathogenic mutation identified from complete screen of coding sequences and intron-exon junctions.
Description

Elig.phs000480.v1.p1.5

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C2317641
UMLS CUI [1,3]
C0549184
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C2317644
UMLS CUI [2,3]
C0549184
*Exclusion criteria:*<br />
Description

Elig.phs000480.v1.p1.6

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
&#8804;3 women diagnosed under age 60 years among first and second-degree relatives of proband.
Description

Elig.phs000480.v1.p1.7

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C1828181
UMLS CUI [1,3]
C0449788
UMLS CUI [1,4]
C1517194
UMLS CUI [1,5]
C1519210
UMLS CUI [1,6]
C0392760
Male breast case in family.
Description

Elig.phs000480.v1.p1.8

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C0241889
UMLS CUI [1,3]
C0242787
BRCA1 or BRCA2 pathogenic mutation present in germline DNA from any family member.
Description

Elig.phs000480.v1.p1.9

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C2317641
UMLS CUI [1,3]
C3845275
UMLS CUI [1,4]
C0086282
UMLS CUI [2,1]
C0680251
UMLS CUI [2,2]
C2317644
UMLS CUI [2,3]
C3845275
UMLS CUI [2,4]
C0086282
Inactivating mutation in any other known breast cancer predisposition gene.
Description

Elig.phs000480.v1.p1.10

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C0026882
UMLS CUI [1,3]
C0017337
UMLS CUI [1,4]
C0220898
UMLS CUI [1,5]
C0006142
No first or second degree relative pairs affected with breast cancer with available DNA samples.
Description

Elig.phs000480.v1.p1.11

Data type

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C0686905
UMLS CUI [1,3]
C2986526
UMLS CUI [1,4]
C0006142
UMLS CUI [1,5]
C1517194
UMLS CUI [1,6]
C1519210

Similar models

Eligibility Criteria

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs000480.v1.p1.1
Item
*Inclusion criteria for families:*
boolean
C1512693 (UMLS CUI [1,1])
Elig.phs000480.v1.p1.2
Item
Family history of breast cancer with three or more women diagnosed with breast cancer under age 60 among first and second-degree relatives of probands.
boolean
C1512693 (UMLS CUI [1,1])
C0559119 (UMLS CUI [1,2])
C0043210 (UMLS CUI [1,3])
C1828181 (UMLS CUI [1,4])
C0449788 (UMLS CUI [1,5])
C1517194 (UMLS CUI [1,6])
C1519210 (UMLS CUI [1,7])
C0392760 (UMLS CUI [1,8])
Elig.phs000480.v1.p1.3
Item
Clear evidence of Mendelian segregation of disease.
boolean
C1512693 (UMLS CUI [1,1])
C0006142 (UMLS CUI [1,2])
C0683231 (UMLS CUI [1,3])
Elig.phs000480.v1.p1.4
Item
Germline DNA samples available from at least two second-degree relatives affected with breast cancer under age 60.
boolean
C1512693 (UMLS CUI [1,1])
C0470187 (UMLS CUI [1,2])
C2986526 (UMLS CUI [1,3])
C1519210 (UMLS CUI [1,4])
C0006142 (UMLS CUI [1,5])
C1828181 (UMLS CUI [1,6])
Elig.phs000480.v1.p1.5
Item
No BRCA1 or BRCA2 pathogenic mutation identified from complete screen of coding sequences and intron-exon junctions.
boolean
C1512693 (UMLS CUI [1,1])
C2317641 (UMLS CUI [1,2])
C0549184 (UMLS CUI [1,3])
C1512693 (UMLS CUI [2,1])
C2317644 (UMLS CUI [2,2])
C0549184 (UMLS CUI [2,3])
Elig.phs000480.v1.p1.6
Item
*Exclusion criteria:*<br />
boolean
C0680251 (UMLS CUI [1,1])
Elig.phs000480.v1.p1.7
Item
&#8804;3 women diagnosed under age 60 years among first and second-degree relatives of proband.
boolean
C0680251 (UMLS CUI [1,1])
C1828181 (UMLS CUI [1,2])
C0449788 (UMLS CUI [1,3])
C1517194 (UMLS CUI [1,4])
C1519210 (UMLS CUI [1,5])
C0392760 (UMLS CUI [1,6])
Elig.phs000480.v1.p1.8
Item
Male breast case in family.
boolean
C0680251 (UMLS CUI [1,1])
C0241889 (UMLS CUI [1,2])
C0242787 (UMLS CUI [1,3])
Elig.phs000480.v1.p1.9
Item
BRCA1 or BRCA2 pathogenic mutation present in germline DNA from any family member.
boolean
C0680251 (UMLS CUI [1,1])
C2317641 (UMLS CUI [1,2])
C3845275 (UMLS CUI [1,3])
C0086282 (UMLS CUI [1,4])
C0680251 (UMLS CUI [2,1])
C2317644 (UMLS CUI [2,2])
C3845275 (UMLS CUI [2,3])
C0086282 (UMLS CUI [2,4])
Elig.phs000480.v1.p1.10
Item
Inactivating mutation in any other known breast cancer predisposition gene.
boolean
C0680251 (UMLS CUI [1,1])
C0026882 (UMLS CUI [1,2])
C0017337 (UMLS CUI [1,3])
C0220898 (UMLS CUI [1,4])
C0006142 (UMLS CUI [1,5])
Elig.phs000480.v1.p1.11
Item
No first or second degree relative pairs affected with breast cancer with available DNA samples.
boolean
C0680251 (UMLS CUI [1,1])
C0686905 (UMLS CUI [1,2])
C2986526 (UMLS CUI [1,3])
C0006142 (UMLS CUI [1,4])
C1517194 (UMLS CUI [1,5])
C1519210 (UMLS CUI [1,6])

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