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ID

45216

Descrição

Principal Investigator: Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA MeSH: Asthma,Respiratory Function Tests https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000422 The NHLBI "Grand Opportunity" Exome Sequencing Project (GO-ESP), a signature project of the NHLBI Recovery Act investment, was designed to identify genetic variants in coding regions (exons) of the human genome (the "exome") that are associated with heart, lung and blood diseases. These and related diseases that are of high impact to public health and individuals from diverse racial and ethnic groups will be studied. These data may help researchers understand the causes of disease, contributing to better ways to prevent, diagnose, and treat diseases, as well as determine whether to tailor prevention and treatments to specific populations. This could lead to more effective treatments and reduce the likelihood of side effects. GO-ESP is comprised of five collaborative components: 3 cohort consortia - HeartGO, LungGO, and WHISP - and 2 sequencing centers - BroadGO and SeattleGO. The exome sequencing asthma project includes 200 African-Americans with asthma from the NHLBI multicenter Severe Asthma Research Program (SARP). SARP participants were recruited at the NHLBI SARP sites with an emphasis on recruiting severe asthmatics (Moore et al., Am J Respir Crit Care Med, 2010. PMID: 19892860). Asthma status was based on both a physician's diagnosis and either bronchodilator reversibility or hyper-responsiveness to methacholine as well as less than 5 pack years of smoking. All subjects were carefully characterized using the standardized SARP protocol which included spirometry (medication withheld), maximum bronchodilator reversibility, hyper-responsiveness to methacholine (not performed in subjects with low baseline FEV1), skin-tests to common allergens, questionnaires on health care utilization and medication use and sputum, lung imaging and bronchoscopy in a subset. In addition GWAS data are available (phs000355, Illumina platform).

Link

dbGaP study = phs000422

Palavras-chave

  1. 31/07/2022 31/07/2022 - Chiara Middel
  2. 12/10/2022 12/10/2022 - Adrian Schulz
Titular dos direitos

Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA

Transferido a

12 de outubro de 2022

DOI

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Licença

Creative Commons BY 4.0

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    dbGaP phs000422 NHLBI GO-ESP: Lung Cohorts Exome Sequencing Project (Asthma)

    The dataset contains information about sample and tumor type (tumor/normal; primary/not), somatic location of sample tissue source, the extent of the tumor (tumor percent), etc..

    pht003226
    Descrição

    pht003226

    De-identified Sample ID
    Descrição

    SAMPID

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C4684638 (De-identified Information)
    UMLS CUI [1,2]
    C1299222 (Sample identification number)
    SNOMED
    372274003
    Body site where sample was collected
    Descrição

    BODY_SITE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C1515974 (Anatomic Site)
    UMLS CUI [1,2]
    C0200345 (Specimen Collection)
    SNOMED
    17636008
    Analyte Type
    Descrição

    ANALYTE_TYPE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C4744818 (Analyte Type)
    Cell or tissue type or subtype of sample
    Descrição

    HISTOLOGICAL_TYPE

    Tipo de dados

    string

    Alias
    UMLS CUI [1,1]
    C0449475 (cell type)
    SNOMED
    246238003
    UMLS CUI [1,2]
    C2713035 (Tissue type)
    LOINC
    LP91024-7
    UMLS CUI [1,3]
    C0449560 (Subtype (attribute))
    SNOMED
    260837004

    Similar models

    The dataset contains information about sample and tumor type (tumor/normal; primary/not), somatic location of sample tissue source, the extent of the tumor (tumor percent), etc..

    Name
    Tipo
    Description | Question | Decode (Coded Value)
    Tipo de dados
    Alias
    Item Group
    pht003226
    SAMPID
    Item
    De-identified Sample ID
    string
    C4684638 (UMLS CUI [1,1])
    C1299222 (UMLS CUI [1,2])
    BODY_SITE
    Item
    Body site where sample was collected
    string
    C1515974 (UMLS CUI [1,1])
    C0200345 (UMLS CUI [1,2])
    ANALYTE_TYPE
    Item
    Analyte Type
    string
    C4744818 (UMLS CUI [1,1])
    HISTOLOGICAL_TYPE
    Item
    Cell or tissue type or subtype of sample
    string
    C0449475 (UMLS CUI [1,1])
    C2713035 (UMLS CUI [1,2])
    C0449560 (UMLS CUI [1,3])

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