0 Beoordelingen

ID

45216

Beschrijving

Principal Investigator: Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA MeSH: Asthma,Respiratory Function Tests https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000422 The NHLBI "Grand Opportunity" Exome Sequencing Project (GO-ESP), a signature project of the NHLBI Recovery Act investment, was designed to identify genetic variants in coding regions (exons) of the human genome (the "exome") that are associated with heart, lung and blood diseases. These and related diseases that are of high impact to public health and individuals from diverse racial and ethnic groups will be studied. These data may help researchers understand the causes of disease, contributing to better ways to prevent, diagnose, and treat diseases, as well as determine whether to tailor prevention and treatments to specific populations. This could lead to more effective treatments and reduce the likelihood of side effects. GO-ESP is comprised of five collaborative components: 3 cohort consortia - HeartGO, LungGO, and WHISP - and 2 sequencing centers - BroadGO and SeattleGO. The exome sequencing asthma project includes 200 African-Americans with asthma from the NHLBI multicenter Severe Asthma Research Program (SARP). SARP participants were recruited at the NHLBI SARP sites with an emphasis on recruiting severe asthmatics (Moore et al., Am J Respir Crit Care Med, 2010. PMID: 19892860). Asthma status was based on both a physician's diagnosis and either bronchodilator reversibility or hyper-responsiveness to methacholine as well as less than 5 pack years of smoking. All subjects were carefully characterized using the standardized SARP protocol which included spirometry (medication withheld), maximum bronchodilator reversibility, hyper-responsiveness to methacholine (not performed in subjects with low baseline FEV1), skin-tests to common allergens, questionnaires on health care utilization and medication use and sputum, lung imaging and bronchoscopy in a subset. In addition GWAS data are available (phs000355, Illumina platform).

Link

dbGaP study = phs000422

Trefwoorden

  1. 31-07-22 31-07-22 - Chiara Middel
  2. 12-10-22 12-10-22 - Adrian Schulz
Houder van rechten

Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA

Geüploaded op

12 oktober 2022

DOI

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Licentie

Creative Commons BY 4.0

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    dbGaP phs000422 NHLBI GO-ESP: Lung Cohorts Exome Sequencing Project (Asthma)

    The dataset contains phenotype data, including BMI, height/weight, white blood cell counts (lymphocytes, monocytes, neutrophils),and general demographic information.

    pht003225
    Beschrijving

    pht003225

    GO Sub-study (LUNGGO)
    Beschrijving

    STUDY

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C0947630
    De-identified Subject ID
    Beschrijving

    SUBJID

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C2348585
    UMLS CUI [1,2]
    C4684638
    Study Cohort (SARP)
    Beschrijving

    ESP_COHORT

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C0599755
    Main phenotype studied (ASTHMA)
    Beschrijving

    ESP_PHENOTYPE

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C1542147
    UMLS CUI [1,2]
    C0031437
    Race of participant
    Beschrijving

    ESP_RACE

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C0034510
    Gender of participant
    Beschrijving

    ESP_SEX

    Datatype

    string

    Alias
    UMLS CUI [1,1]
    C0079399
    Age of participant at baseline
    Beschrijving

    ESP_AGE_BASELINE

    Datatype

    float

    Maateenheden
    • Years
    Alias
    UMLS CUI [1,1]
    C0001779
    UMLS CUI [1,2]
    C1442488
    Years
    Body mass index of participant at baseline
    Beschrijving

    ESP_BMI_BASELINE

    Datatype

    float

    Maateenheden
    • kg/(m)^2
    Alias
    UMLS CUI [1,1]
    C1305855
    UMLS CUI [1,2]
    C1442488
    kg/(m)^2
    Current smoker at baseline
    Beschrijving

    ESP_CURRENT_SMOKER_BASELINE

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C1519386
    UMLS CUI [1,2]
    C1442488
    Neutrophil count/total white blood cell count
    Beschrijving

    ESP_NEUTROPHILS

    Datatype

    float

    Alias
    UMLS CUI [1,1]
    C0200633
    UMLS CUI [1,2]
    C0023508
    Monocyte count/total white blood cell count
    Beschrijving

    ESP_MONOCYTES

    Datatype

    float

    Alias
    UMLS CUI [1,1]
    C0200637
    UMLS CUI [1,2]
    C0023508
    Lymphocyte count/total white blood cell count
    Beschrijving

    ESP_LYMPHOCYTES

    Datatype

    float

    Alias
    UMLS CUI [1,1]
    C0200635
    UMLS CUI [1,2]
    C0023508
    Asthma status of participant at baseline
    Beschrijving

    ESP_ASTHMA_STATUS_BASELINE

    Datatype

    text

    Alias
    UMLS CUI [1,1]
    C0004096
    UMLS CUI [1,2]
    C0449438
    UMLS CUI [1,3]
    C1442488
    Height of participant at baseline
    Beschrijving

    ESP_HEIGHT

    Datatype

    float

    Maateenheden
    • cm
    Alias
    UMLS CUI [1,1]
    C0005890
    UMLS CUI [1,2]
    C1442488
    cm
    Weight of participant at baseline
    Beschrijving

    ESP_WEIGHT

    Datatype

    float

    Maateenheden
    • kg
    Alias
    UMLS CUI [1,1]
    C0005910
    kg

    Similar models

    The dataset contains phenotype data, including BMI, height/weight, white blood cell counts (lymphocytes, monocytes, neutrophils),and general demographic information.

    Name
    Type
    Description | Question | Decode (Coded Value)
    Datatype
    Alias
    Item Group
    pht003225
    STUDY
    Item
    GO Sub-study (LUNGGO)
    string
    C0947630 (UMLS CUI [1,1])
    SUBJID
    Item
    De-identified Subject ID
    string
    C2348585 (UMLS CUI [1,1])
    C4684638 (UMLS CUI [1,2])
    ESP_COHORT
    Item
    Study Cohort (SARP)
    string
    C0599755 (UMLS CUI [1,1])
    ESP_PHENOTYPE
    Item
    Main phenotype studied (ASTHMA)
    string
    C1542147 (UMLS CUI [1,1])
    C0031437 (UMLS CUI [1,2])
    ESP_RACE
    Item
    Race of participant
    string
    C0034510 (UMLS CUI [1,1])
    ESP_SEX
    Item
    Gender of participant
    string
    C0079399 (UMLS CUI [1,1])
    ESP_AGE_BASELINE
    Item
    Age of participant at baseline
    float
    C0001779 (UMLS CUI [1,1])
    C1442488 (UMLS CUI [1,2])
    ESP_BMI_BASELINE
    Item
    Body mass index of participant at baseline
    float
    C1305855 (UMLS CUI [1,1])
    C1442488 (UMLS CUI [1,2])
    Item
    Current smoker at baseline
    text
    C1519386 (UMLS CUI [1,1])
    C1442488 (UMLS CUI [1,2])
    Code List
    Current smoker at baseline
    CL Item
    Non-smoker (0)
    C0337672 (UMLS CUI [1,1])
    CL Item
    Smoker (1)
    C3241966 (UMLS CUI [1,1])
    ESP_NEUTROPHILS
    Item
    Neutrophil count/total white blood cell count
    float
    C0200633 (UMLS CUI [1,1])
    C0023508 (UMLS CUI [1,2])
    ESP_MONOCYTES
    Item
    Monocyte count/total white blood cell count
    float
    C0200637 (UMLS CUI [1,1])
    C0023508 (UMLS CUI [1,2])
    ESP_LYMPHOCYTES
    Item
    Lymphocyte count/total white blood cell count
    float
    C0200635 (UMLS CUI [1,1])
    C0023508 (UMLS CUI [1,2])
    Item
    Asthma status of participant at baseline
    text
    C0004096 (UMLS CUI [1,1])
    C0449438 (UMLS CUI [1,2])
    C1442488 (UMLS CUI [1,3])
    Code List
    Asthma status of participant at baseline
    CL Item
    Non-asthmatic (0)
    C1298908 (UMLS CUI [1,1])
    C0004096 (UMLS CUI [1,2])
    CL Item
    Asthmatic (1)
    C0004096 (UMLS CUI [1,1])
    ESP_HEIGHT
    Item
    Height of participant at baseline
    float
    C0005890 (UMLS CUI [1,1])
    C1442488 (UMLS CUI [1,2])
    ESP_WEIGHT
    Item
    Weight of participant at baseline
    float
    C0005910 (UMLS CUI [1,1])

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