ID

45216

Descripción

Principal Investigator: Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA MeSH: Asthma,Respiratory Function Tests https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000422 The NHLBI "Grand Opportunity" Exome Sequencing Project (GO-ESP), a signature project of the NHLBI Recovery Act investment, was designed to identify genetic variants in coding regions (exons) of the human genome (the "exome") that are associated with heart, lung and blood diseases. These and related diseases that are of high impact to public health and individuals from diverse racial and ethnic groups will be studied. These data may help researchers understand the causes of disease, contributing to better ways to prevent, diagnose, and treat diseases, as well as determine whether to tailor prevention and treatments to specific populations. This could lead to more effective treatments and reduce the likelihood of side effects. GO-ESP is comprised of five collaborative components: 3 cohort consortia - HeartGO, LungGO, and WHISP - and 2 sequencing centers - BroadGO and SeattleGO. The exome sequencing asthma project includes 200 African-Americans with asthma from the NHLBI multicenter Severe Asthma Research Program (SARP). SARP participants were recruited at the NHLBI SARP sites with an emphasis on recruiting severe asthmatics (Moore et al., Am J Respir Crit Care Med, 2010. PMID: 19892860). Asthma status was based on both a physician's diagnosis and either bronchodilator reversibility or hyper-responsiveness to methacholine as well as less than 5 pack years of smoking. All subjects were carefully characterized using the standardized SARP protocol which included spirometry (medication withheld), maximum bronchodilator reversibility, hyper-responsiveness to methacholine (not performed in subjects with low baseline FEV1), skin-tests to common allergens, questionnaires on health care utilization and medication use and sputum, lung imaging and bronchoscopy in a subset. In addition GWAS data are available (phs000355, Illumina platform).

Link

dbGaP study = phs000422

Palabras clave

  1. 31/7/22 31/7/22 - Chiara Middel
  2. 12/10/22 12/10/22 - Adrian Schulz
Titular de derechos de autor

Deborah A. Meyers, PhD, Wake Forest School of Medicine, Winston-Salem, NC, USA

Subido en

12 de octubre de 2022

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs000422 NHLBI GO-ESP: Lung Cohorts Exome Sequencing Project (Asthma)

The dataset contains phenotype data, including BMI, height/weight, white blood cell counts (lymphocytes, monocytes, neutrophils),and general demographic information.

pht003225
Descripción

pht003225

GO Sub-study (LUNGGO)
Descripción

STUDY

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0947630
De-identified Subject ID
Descripción

SUBJID

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C4684638
Study Cohort (SARP)
Descripción

ESP_COHORT

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0599755
Main phenotype studied (ASTHMA)
Descripción

ESP_PHENOTYPE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1542147
UMLS CUI [1,2]
C0031437
Race of participant
Descripción

ESP_RACE

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0034510
Gender of participant
Descripción

ESP_SEX

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0079399
Age of participant at baseline
Descripción

ESP_AGE_BASELINE

Tipo de datos

float

Unidades de medida
  • Years
Alias
UMLS CUI [1,1]
C0001779
UMLS CUI [1,2]
C1442488
Years
Body mass index of participant at baseline
Descripción

ESP_BMI_BASELINE

Tipo de datos

float

Unidades de medida
  • kg/(m)^2
Alias
UMLS CUI [1,1]
C1305855
UMLS CUI [1,2]
C1442488
kg/(m)^2
Current smoker at baseline
Descripción

ESP_CURRENT_SMOKER_BASELINE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C1519386
UMLS CUI [1,2]
C1442488
Neutrophil count/total white blood cell count
Descripción

ESP_NEUTROPHILS

Tipo de datos

float

Alias
UMLS CUI [1,1]
C0200633
UMLS CUI [1,2]
C0023508
Monocyte count/total white blood cell count
Descripción

ESP_MONOCYTES

Tipo de datos

float

Alias
UMLS CUI [1,1]
C0200637
UMLS CUI [1,2]
C0023508
Lymphocyte count/total white blood cell count
Descripción

ESP_LYMPHOCYTES

Tipo de datos

float

Alias
UMLS CUI [1,1]
C0200635
UMLS CUI [1,2]
C0023508
Asthma status of participant at baseline
Descripción

ESP_ASTHMA_STATUS_BASELINE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0004096
UMLS CUI [1,2]
C0449438
UMLS CUI [1,3]
C1442488
Height of participant at baseline
Descripción

ESP_HEIGHT

Tipo de datos

float

Unidades de medida
  • cm
Alias
UMLS CUI [1,1]
C0005890
UMLS CUI [1,2]
C1442488
cm
Weight of participant at baseline
Descripción

ESP_WEIGHT

Tipo de datos

float

Unidades de medida
  • kg
Alias
UMLS CUI [1,1]
C0005910
kg

Similar models

The dataset contains phenotype data, including BMI, height/weight, white blood cell counts (lymphocytes, monocytes, neutrophils),and general demographic information.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht003225
STUDY
Item
GO Sub-study (LUNGGO)
string
C0947630 (UMLS CUI [1,1])
SUBJID
Item
De-identified Subject ID
string
C2348585 (UMLS CUI [1,1])
C4684638 (UMLS CUI [1,2])
ESP_COHORT
Item
Study Cohort (SARP)
string
C0599755 (UMLS CUI [1,1])
ESP_PHENOTYPE
Item
Main phenotype studied (ASTHMA)
string
C1542147 (UMLS CUI [1,1])
C0031437 (UMLS CUI [1,2])
ESP_RACE
Item
Race of participant
string
C0034510 (UMLS CUI [1,1])
ESP_SEX
Item
Gender of participant
string
C0079399 (UMLS CUI [1,1])
ESP_AGE_BASELINE
Item
Age of participant at baseline
float
C0001779 (UMLS CUI [1,1])
C1442488 (UMLS CUI [1,2])
ESP_BMI_BASELINE
Item
Body mass index of participant at baseline
float
C1305855 (UMLS CUI [1,1])
C1442488 (UMLS CUI [1,2])
Item
Current smoker at baseline
text
C1519386 (UMLS CUI [1,1])
C1442488 (UMLS CUI [1,2])
Code List
Current smoker at baseline
CL Item
Non-smoker (0)
C0337672 (UMLS CUI [1,1])
CL Item
Smoker (1)
C3241966 (UMLS CUI [1,1])
ESP_NEUTROPHILS
Item
Neutrophil count/total white blood cell count
float
C0200633 (UMLS CUI [1,1])
C0023508 (UMLS CUI [1,2])
ESP_MONOCYTES
Item
Monocyte count/total white blood cell count
float
C0200637 (UMLS CUI [1,1])
C0023508 (UMLS CUI [1,2])
ESP_LYMPHOCYTES
Item
Lymphocyte count/total white blood cell count
float
C0200635 (UMLS CUI [1,1])
C0023508 (UMLS CUI [1,2])
Item
Asthma status of participant at baseline
text
C0004096 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C1442488 (UMLS CUI [1,3])
Code List
Asthma status of participant at baseline
CL Item
Non-asthmatic (0)
C1298908 (UMLS CUI [1,1])
C0004096 (UMLS CUI [1,2])
CL Item
Asthmatic (1)
C0004096 (UMLS CUI [1,1])
ESP_HEIGHT
Item
Height of participant at baseline
float
C0005890 (UMLS CUI [1,1])
C1442488 (UMLS CUI [1,2])
ESP_WEIGHT
Item
Weight of participant at baseline
float
C0005910 (UMLS CUI [1,1])

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