0 Bedömningar

ID

45189

Beskrivning

Principal Investigator: Philip R. Taylor, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA MeSH: Squamous Cell Carcinoma,Esophageal Cancer,Gastric Cancer https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000361 This project aims to conduct genome-wide association studies (GWAS) in two anatomically different upper gastrointestinal (UGI) cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCCs) and gastric cancers (GCs) and is comprised of Asians (*the "Asian UGI GWAS"*), while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia (*the "Non-Asian UGI GWAS"*). Study participants for the Asian UGI GWAS reported here (Illumina 660W Quad chip) were drawn from 2 studies, the Shanxi Upper Gastrointestinal Cancer Genetics Project (Shanxi) and the Linxian Nutrition Intervention Trial (NIT), a prospective cohort, and included a total of 1898 ESCCs, 1625 GCs, and 2100 controls. For the 2nd phase (8 TaqMan SNPs), additional subjects from Shanxi and NIT as well as subjects from the Shanghai Men's Health Study (SMHS), the Shanghai Women's Health Study (SWHS), and the Singapore Chinese Health Study (SCHS) were also included (217 ESCCs, 615 GCs, 1202 controls). Altogether 2115 ESCCs, 2240 GCs, and 3302 controls were genotyped in this study.

Länk

dbGaP study = phs000361

Nyckelord

  1. 2022-08-19 2022-08-19 - Simon Heim
  2. 2022-10-12 2022-10-12 - Adrian Schulz
Rättsinnehavare

Philip R. Taylor, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA

Uppladdad den

12 oktober 2022

DOI

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Licens

Creative Commons BY 4.0

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    dbGaP phs000361 Genome-Wide Association Studies in Upper Gastrointestinal Cancers (Asian)

    Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.

    1. StudyEvent: SEV1
      1. Eligibility Criteria
      2. Subject ID, consent group, and affection status of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
      3. Sample ID and subject ID of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
      4. Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    pht002223
    Beskrivning

    pht002223

    De-identified subject's ID
    Beskrivning

    SUBJID

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C2346787
    UMLS CUI [1,2]
    C2348585
    Cohort study or case-control study [COHORT, CASE-CONTROL ]
    Beskrivning

    STUDY_DESIGN

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C3274646
    Case or control? [ESCC CASE=Esophageal squamous cell carcinomas, GC CASE=Gastric cancers, CONTROL=Control]
    Beskrivning

    CASE_CONTROL

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0009932
    UMLS CUI [2,1]
    C1706256
    UMLS CUI [2,2]
    C0279626
    UMLS CUI [2,3]
    C0024623
    Gender of participant [FEMALE, MALE]
    Beskrivning

    SEX

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0079399
    Age at enrollment in 10 year interval
    Beskrivning

    AGE

    Datatyp

    string

    Alias
    UMLS CUI [1,1]
    C0001779

    Similar models

    Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.

    1. StudyEvent: SEV1
      1. Eligibility Criteria
      2. Subject ID, consent group, and affection status of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
      3. Sample ID and subject ID of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
      4. Subject ID, study design (cohort, case or control), affection status, gender, and age of participants involved in genome-wide association studies in two anatomically different upper gastrointestinal cancer sites in two populations with distinctly different disease rates and genetic profiles. One population has very high rates for both esophageal squamous cell carcinomas (ESCC) and gastric cancers (GC) and is comprised of Asians, while the other population has low rates of ESCC and GC and includes non-Asians from the Americas, Europe, and Australia.
    Name
    Typ
    Description | Question | Decode (Coded Value)
    Datatyp
    Alias
    Item Group
    pht002223
    SUBJID
    Item
    De-identified subject's ID
    string
    C2346787 (UMLS CUI [1,1])
    C2348585 (UMLS CUI [1,2])
    STUDY_DESIGN
    Item
    Cohort study or case-control study [COHORT, CASE-CONTROL ]
    string
    C3274646 (UMLS CUI [1,1])
    CASE_CONTROL
    Item
    Case or control? [ESCC CASE=Esophageal squamous cell carcinomas, GC CASE=Gastric cancers, CONTROL=Control]
    string
    C0009932 (UMLS CUI [1,1])
    C1706256 (UMLS CUI [2,1])
    C0279626 (UMLS CUI [2,2])
    C0024623 (UMLS CUI [2,3])
    SEX
    Item
    Gender of participant [FEMALE, MALE]
    string
    C0079399 (UMLS CUI [1,1])
    AGE
    Item
    Age at enrollment in 10 year interval
    string
    C0001779 (UMLS CUI [1,1])

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