ID

45177

Description

Principal Investigator: Jonathan Pevsner, PhD, Kennedy Krieger Institute, Baltimore, MD, USA MeSH: Intellectual disability,Autism Spectrum Disorder,Self-Injurious Behavior,Mitochondrial Diseases https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000337 Developmental disabilities are birth defects that cause lifelong problems with how a body part or system works. Developmental disabilities include nervous system insults affecting how the brain, spinal cord and nervous system function; they cause intellectual disability, including Down syndrome and fragile X syndrome; and they also cause learning and behavioral disorders, such as autism spectrum disorders. At the Kennedy Krieger Institute, approximately 450 inpatients and 13,000 outpatients are seen per year (involving 114,000 visits). For most of these disorders, the underlying molecular cause has not been identified. Some, such as chromosomal disorders, have a strongly genetic basis while others, such as traumatic brain injury, are caused by environmental insults but are nonetheless influenced by the genetic background. The purpose of the present study is to identify chromosomal abnormalities underlying a variety of developmental disabilities. The approach is to obtain blood and saliva from children, and from one or both biological parents (and in some cases from siblings and/or additional relatives). Genomic DNA is purified and assayed on single nucleotide polymorphism (SNP) microarrays and/or by sequencing, including whole genome sequencing. These technologies provide high resolution information about chromosomal changes, and the information provided by the parental (and other relatives') DNA allows an interpretation of whether changes in a child are inherited or occur *de novo*. The study design includes multiple data analysis procedures to interpret the biological significance of findings of chromosomal changes relative to a child's parents, relative to children with similar diagnoses, relative to children with other chromosomal anomalies, and (in some cases) relative to the chromosomal status of siblings. We will further interpret the significance of the findings relative to the general (apparently normal) population by obtaining publicly available data from apparently normal individuals.

Link

dbGaP study = phs000337

Keywords

  1. 22/08/22 22/08/22 - Simon Heim
  2. 12/10/22 12/10/22 - Adrian Schulz
Copyright Holder

Jonathan Pevsner, PhD, Kennedy Krieger Institute, Baltimore, MD, USA

Uploaded on

12 ottobre 2022

DOI

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License

Creative Commons BY 4.0

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dbGaP phs000337 Genetic Basis of Developmental Disabilities

Eligibility Criteria

Inclusion and exclusion criteria
Description

Inclusion and exclusion criteria

Inclusion Criteria for *SNP Arrays*:
Description

Inclusion Criteria for *SNP Arrays*:

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
(1) Participant is under age 18 years;
Description

Participant is under age 18 years;

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [2,1]
C0001779
(2) at least one biological parent available to participate.Exclusion Criterion for SNP Array:
Description

at least one biological parent available to participate.Exclusion Criterion for SNP Array:

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0470187
UMLS CUI [1,3]
C0337465
UMLS CUI [1,4]
C0679823
(1) Patient is in foster care.Inclusion Criteria for *Whole Genome Sequencing*:
Description

Patient is in foster care.Inclusion Criteria for *Whole Genome Sequencing*:

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0580719
(1) Participant is under age 18 years;
Description

Participant is under age 18 years;

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [2,1]
C0001779
(2) at least one biological parent available to participate.Exclusion Criterion for Whole Genome Sequencing:
Description

at least one biological parent available to participate.Exclusion Criterion for Whole Genome Sequencing:

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0470187
UMLS CUI [1,3]
C0337465
UMLS CUI [1,4]
C0679823
(1) Patient is in foster care.Inclusion Criteria for *Whole Exome Sequencing*:
Description

Patient is in foster care.Inclusion Criteria for *Whole Exome Sequencing*:

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0580719
(1) Postmortem samples in which both brain (prefrontal cortex) and either heart or kidney tissue was available.
Description

Postmortem samples in which both brain (prefrontal cortex) and either heart or kidney tissue was available.

Data type

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0580205
UMLS CUI [1,3]
C0370003
UMLS CUI [1,4]
C0162783
UMLS CUI [1,5]
C0018787
UMLS CUI [1,6]
C0022646

Similar models

Eligibility Criteria

Name
Type
Description | Question | Decode (Coded Value)
Data type
Alias
Item Group
Inclusion and exclusion criteria
Inclusion Criteria for *SNP Arrays*:
Item
Inclusion Criteria for *SNP Arrays*:
boolean
C1512693 (UMLS CUI [1,1])
Participant is under age 18 years;
Item
(1) Participant is under age 18 years;
boolean
C1512693 (UMLS CUI [1,1])
C0001779 (UMLS CUI [2,1])
at least one biological parent available to participate.Exclusion Criterion for SNP Array:
Item
(2) at least one biological parent available to participate.Exclusion Criterion for SNP Array:
boolean
C1512693 (UMLS CUI [1,1])
C0470187 (UMLS CUI [1,2])
C0337465 (UMLS CUI [1,3])
C0679823 (UMLS CUI [1,4])
Patient is in foster care.Inclusion Criteria for *Whole Genome Sequencing*:
Item
(1) Patient is in foster care.Inclusion Criteria for *Whole Genome Sequencing*:
boolean
C1512693 (UMLS CUI [1,1])
C0580719 (UMLS CUI [1,2])
Participant is under age 18 years;
Item
(1) Participant is under age 18 years;
boolean
C1512693 (UMLS CUI [1,1])
C0001779 (UMLS CUI [2,1])
at least one biological parent available to participate.Exclusion Criterion for Whole Genome Sequencing:
Item
(2) at least one biological parent available to participate.Exclusion Criterion for Whole Genome Sequencing:
boolean
C1512693 (UMLS CUI [1,1])
C0470187 (UMLS CUI [1,2])
C0337465 (UMLS CUI [1,3])
C0679823 (UMLS CUI [1,4])
Patient is in foster care.Inclusion Criteria for *Whole Exome Sequencing*:
Item
(1) Patient is in foster care.Inclusion Criteria for *Whole Exome Sequencing*:
boolean
C1512693 (UMLS CUI [1,1])
C0580719 (UMLS CUI [1,2])
Postmortem samples in which both brain (prefrontal cortex) and either heart or kidney tissue was available.
Item
(1) Postmortem samples in which both brain (prefrontal cortex) and either heart or kidney tissue was available.
boolean
C1512693 (UMLS CUI [1,1])
C0580205 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
C0162783 (UMLS CUI [1,4])
C0018787 (UMLS CUI [1,5])
C0022646 (UMLS CUI [1,6])

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