ID

45137

Beskrivning

Principal Investigator: Andrea Dunaif, MD, Northwestern University Feinberg School of Medicine, Chicago, IL, USA MeSH: Polycystic Ovary Syndrome https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000368 *PCOS* is a complex genetic disease reflecting the interplay of susceptibility genes and environmental factors. The cardinal reproductive feature of the syndrome, hyperandrogenemia, appears to play a direct role in the pathogenesis of the associated metabolic abnormalities. Male as well as female first-degree relatives have reproductive and metabolic phenotypes including increased prevalence rates of type 2 diabetes (T2D), metabolic syndrome (MBS) and other risk factors for cardiovascular disease (CVD). Northwestern University (NU) investigators lead a team that has extensive experience in phenotyping PCOS and in the genetic analysis of complex diseases including genome-wide association study (GWAS). Together with an expert group of collaborators from the Hershey Medical Center, and The University of Chicago, we have conducted a GWAS to identify PCOS susceptibility alleles using a large cohort of extensively and consistently phenotyped PCOS cases. Population controls for this study come from the NUgene project described below. *NUgene project*: In 2002, Northwestern committed to the development of a DNA repository to serve as a platform for the identification and validation of genotype-phenotype associations that will impact healthcare. The NUgene Project is a repository with longitudinal medical information from participating patients at affiliated hospitals and outpatient clinics from the Northwestern University Medical Center. Participants' DNA samples are coupled with data from a questionnaire (2 versions were used, 1 before and 1 after February 2006, both are included) and continuously updated data from our Electronic Medical Record (EMR) representing actual clinical care events. Northwestern has a state-of-the art, comprehensive inpatient and outpatient EMR system of over 2 million patients. NUgene has broad access to participant data for all outpatient visits as well as inpatient data via a consolidated data warehouse. NUgene participants consent to distribution and use of their coded DNA samples and data for a broad range of genetic research by third-party investigators.

Länk

dbGaP study=phs000368

Nyckelord

  1. 2022-08-30 2022-08-30 - Simon Heim
  2. 2022-10-12 2022-10-12 - Dr. Christian Niklas
  3. 2022-10-12 2022-10-12 - Dr. Christian Niklas
  4. 2022-10-12 2022-10-12 - Adrian Schulz
Rättsinnehavare

Andrea Dunaif, MD, Northwestern University Feinberg School of Medicine, Chicago, IL, USA

Uppladdad den

12 oktober 2022

DOI

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Licens

Creative Commons BY 4.0

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dbGaP phs000368 POLYGEN

Eligibility Criteria

Inclusion and exclusion criteria
Beskrivning

Inclusion and exclusion criteria

*Study population* Suitable participant DNA samples from females self-identified as Caucasian or European-ancestry were selected from PCOS clinical study participants (cases), and from the NUgene biobank (controls).
Beskrivning

*Study population* Suitable participant DNA samples from females self-identified as Caucasian or European-ancestry were selected from PCOS clinical study participants (cases), and from the NUgene biobank (controls).

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C0032460
UMLS CUI [1,3]
C0012854
UMLS CUI [1,4]
C0370003
UMLS CUI [1,5]
C0007457
UMLS CUI [2,1]
C0009932
UMLS CUI [2,2]
C3824747
*Identification of Cases* Patients must have met all of the following criteria:
Beskrivning

*Identification of Cases* Patients must have met all of the following criteria:

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1706256
Females enrolled in one of the four participating PCOS studies
Beskrivning

Females enrolled in one of the four participating PCOS studies

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C0032460
UMLS CUI [1,4]
C0947630
Fulfill the NICHD criteria for the diagnosis of PCOS: <ol type="a">
Beskrivning

Fulfill the NICHD criteria for the diagnosis of PCOS: <ol type="a">

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C0032460
UMLS CUI [1,4]
C0011900
UMLS CUI [1,5]
C1513896
elevated total testosterone (T) or biologically available T (uT) level
Beskrivning

elevated total testosterone (T) or biologically available T (uT) level

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C2675018
chronic anovulation defined by <8 menses/year;
Beskrivning

chronic anovulation defined by <8 menses/year;

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C0003128
UMLS CUI [1,4]
C0205191
exclusion of specific disorders of the pituitary, ovary or adrenal.
Beskrivning

exclusion of specific disorders of the pituitary, ovary or adrenal.

Datatyp

boolean

Alias
UMLS CUI [1,1]
C0680251
UMLS CUI [1,2]
C1706256
UMLS CUI [1,3]
C0029928
UMLS CUI [1,4]
C0032002
UMLS CUI [1,5]
C0001621
*Identification of Controls* Patients must have met all of the following criteria:
Beskrivning

*Identification of Controls* Patients must have met all of the following criteria:

Datatyp

boolean

Alias
UMLS CUI [1,1]
C0009932
Females enrolled in NUgene
Beskrivning

Females enrolled in NUgene

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0009932
UMLS CUI [1,3]
C0086287
self-reported Caucasian but no self-reported African ancestry and no self-reported Hispanic/Latino ancestry
Beskrivning

self-reported Caucasian but no self-reported African ancestry and no self-reported Hispanic/Latino ancestry

Datatyp

boolean

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0009932
UMLS CUI [1,3]
C0007457
UMLS CUI [2,1]
C1512693
UMLS CUI [2,2]
C0009932
UMLS CUI [2,3]
C1518424
UMLS CUI [2,4]
C1298908
UMLS CUI [2,5]
C1257891

Similar models

Eligibility Criteria

Name
Typ
Description | Question | Decode (Coded Value)
Datatyp
Alias
Item Group
Inclusion and exclusion criteria
*Study population* Suitable participant DNA samples from females self-identified as Caucasian or European-ancestry were selected from PCOS clinical study participants (cases), and from the NUgene biobank (controls).
Item
*Study population* Suitable participant DNA samples from females self-identified as Caucasian or European-ancestry were selected from PCOS clinical study participants (cases), and from the NUgene biobank (controls).
boolean
C1706256 (UMLS CUI [1,1])
C0032460 (UMLS CUI [1,2])
C0012854 (UMLS CUI [1,3])
C0370003 (UMLS CUI [1,4])
C0007457 (UMLS CUI [1,5])
C0009932 (UMLS CUI [2,1])
C3824747 (UMLS CUI [2,2])
*Identification of Cases* Patients must have met all of the following criteria:
Item
*Identification of Cases* Patients must have met all of the following criteria:
boolean
C1706256 (UMLS CUI [1,1])
Females enrolled in one of the four participating PCOS studies
Item
Females enrolled in one of the four participating PCOS studies
boolean
C1512693 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C0032460 (UMLS CUI [1,3])
C0947630 (UMLS CUI [1,4])
Fulfill the NICHD criteria for the diagnosis of PCOS: <ol type="a">
Item
Fulfill the NICHD criteria for the diagnosis of PCOS: <ol type="a">
boolean
C1512693 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C0032460 (UMLS CUI [1,3])
C0011900 (UMLS CUI [1,4])
C1513896 (UMLS CUI [1,5])
elevated total testosterone (T) or biologically available T (uT) level
Item
elevated total testosterone (T) or biologically available T (uT) level
boolean
C1512693 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C2675018 (UMLS CUI [1,3])
chronic anovulation defined by <8 menses/year;
Item
chronic anovulation defined by <8 menses/year;
boolean
C1512693 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C0003128 (UMLS CUI [1,3])
C0205191 (UMLS CUI [1,4])
exclusion of specific disorders of the pituitary, ovary or adrenal.
Item
exclusion of specific disorders of the pituitary, ovary or adrenal.
boolean
C0680251 (UMLS CUI [1,1])
C1706256 (UMLS CUI [1,2])
C0029928 (UMLS CUI [1,3])
C0032002 (UMLS CUI [1,4])
C0001621 (UMLS CUI [1,5])
*Identification of Controls* Patients must have met all of the following criteria:
Item
*Identification of Controls* Patients must have met all of the following criteria:
boolean
C0009932 (UMLS CUI [1,1])
Females enrolled in NUgene
Item
Females enrolled in NUgene
boolean
C1512693 (UMLS CUI [1,1])
C0009932 (UMLS CUI [1,2])
C0086287 (UMLS CUI [1,3])
self-reported Caucasian but no self-reported African ancestry and no self-reported Hispanic/Latino ancestry
Item
self-reported Caucasian but no self-reported African ancestry and no self-reported Hispanic/Latino ancestry
boolean
C1512693 (UMLS CUI [1,1])
C0009932 (UMLS CUI [1,2])
C0007457 (UMLS CUI [1,3])
C1512693 (UMLS CUI [2,1])
C0009932 (UMLS CUI [2,2])
C1518424 (UMLS CUI [2,3])
C1298908 (UMLS CUI [2,4])
C1257891 (UMLS CUI [2,5])

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