ID

45006

Descrizione

Principal Investigator: Eric Lander, Broad Institute, Cambridge, MA, USA MeSH: Congenital Abnormalities,Bardet-Biedl Syndrome,Orofaciodigital Syndromes https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000288 The study is aimed at identifying new genes involved in pediatric brain disorders from inbred families originating predominantly in the Middle East. Each patient analyzed to date has a specific and highly unique neurodevelopmental disorder that is likely to be recessive in nature. Many patients have one of the diseases along the "ciliopathy" spectrum of diseases, with evidence of kidney failure, retinal blindness and cerebellar ataxia.

collegamento

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000288

Keywords

  1. 04/07/22 04/07/22 - Chiara Middel
  2. 12/10/22 12/10/22 - Adrian Schulz
Titolare del copyright

Eric Lander, Broad Institute, Cambridge, MA, USA

Caricato su

4 luglio 2022

DOI

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Licenza

Creative Commons BY 4.0

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dbGaP phs000288 Ciliopathies Exome Sequencing Initiative

Eligibility Criteria

Inclusion and exclusion criteria
Descrizione

Inclusion and exclusion criteria

Alias
UMLS CUI [1,1]
C1512693
UMLS CUI [1,2]
C0680251
Inclusion criteria:
Descrizione

Elig.phs000288.v2.p2.1

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C1512693
Proband from a family in which parents are 1st or 2nd degree cousins and there is two or more affected individuals in the family.
Descrizione

Elig.phs000288.v2.p2.2

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C0030551
UMLS CUI [1,2]
C1517194
UMLS CUI [1,3]
C1519210
UMLS CUI [2,1]
C3844700
UMLS CUI [2,2]
C0086282
UMLS CUI [2,3]
C0522476
The known genes involved in any similar disease have been excluded, either based upon direct sequencing of the gene, or by excluding the locus.
Descrizione

Elig.phs000288.v2.p2.3

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C2828389
UMLS CUI [1,2]
C0017337
UMLS CUI [1,3]
C3899368
UMLS CUI [2,1]
C2828389
UMLS CUI [2,2]
C0017337
UMLS CUI [2,3]
C1708726
There is adequate quantity of gDNA for analysis.
Descrizione

Elig.phs000288.v2.p2.4

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C0205411
UMLS CUI [1,2]
C1265611
UMLS CUI [1,3]
C3272453
Exclusion criteria:
Descrizione

Elig.phs000288.v2.p2.5

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C0680251
The individual DNA samples from the family must pass strict quality control steps to include: High quality DNA based upon OD 260/280 ratio, each sample must type properly for the assigned sex of the individual based upon X- and Y-chromosom markers, and each sample must show correct inheritance of polymorphic markers within the family.
Descrizione

Elig.phs000288.v2.p2.6

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C0205250
UMLS CUI [1,2]
C0332306
UMLS CUI [1,3]
C0012854
UMLS CUI [2,1]
C0012854
UMLS CUI [2,2]
C2349182
UMLS CUI [2,3]
C0017393
UMLS CUI [2,4]
C0079399
UMLS CUI [3,1]
C0012854
UMLS CUI [3,2]
C2349182
UMLS CUI [3,3]
C0728826
UMLS CUI [3,4]
C0796346
The family must not show a single linkage peak from genome-wide microarray data (otherwise we would use target-capture to identify the gene mutation).
Descrizione

Elig.phs000288.v2.p2.7

Tipo di dati

boolean

Alias
UMLS CUI [1,1]
C1298908
UMLS CUI [1,2]
C0023745
UMLS CUI [1,3]
C3702387

Similar models

Eligibility Criteria

Name
genere
Description | Question | Decode (Coded Value)
Tipo di dati
Alias
Item Group
Inclusion and exclusion criteria
C1512693 (UMLS CUI [1,1])
C0680251 (UMLS CUI [1,2])
Elig.phs000288.v2.p2.1
Item
Inclusion criteria:
boolean
C1512693 (UMLS CUI [1,1])
Elig.phs000288.v2.p2.2
Item
Proband from a family in which parents are 1st or 2nd degree cousins and there is two or more affected individuals in the family.
boolean
C0030551 (UMLS CUI [1,1])
C1517194 (UMLS CUI [1,2])
C1519210 (UMLS CUI [1,3])
C3844700 (UMLS CUI [2,1])
C0086282 (UMLS CUI [2,2])
C0522476 (UMLS CUI [2,3])
Elig.phs000288.v2.p2.3
Item
The known genes involved in any similar disease have been excluded, either based upon direct sequencing of the gene, or by excluding the locus.
boolean
C2828389 (UMLS CUI [1,1])
C0017337 (UMLS CUI [1,2])
C3899368 (UMLS CUI [1,3])
C2828389 (UMLS CUI [2,1])
C0017337 (UMLS CUI [2,2])
C1708726 (UMLS CUI [2,3])
Elig.phs000288.v2.p2.4
Item
There is adequate quantity of gDNA for analysis.
boolean
C0205411 (UMLS CUI [1,1])
C1265611 (UMLS CUI [1,2])
C3272453 (UMLS CUI [1,3])
Elig.phs000288.v2.p2.5
Item
Exclusion criteria:
boolean
C0680251 (UMLS CUI [1,1])
Elig.phs000288.v2.p2.6
Item
The individual DNA samples from the family must pass strict quality control steps to include: High quality DNA based upon OD 260/280 ratio, each sample must type properly for the assigned sex of the individual based upon X- and Y-chromosom markers, and each sample must show correct inheritance of polymorphic markers within the family.
boolean
C0205250 (UMLS CUI [1,1])
C0332306 (UMLS CUI [1,2])
C0012854 (UMLS CUI [1,3])
C0012854 (UMLS CUI [2,1])
C2349182 (UMLS CUI [2,2])
C0017393 (UMLS CUI [2,3])
C0079399 (UMLS CUI [2,4])
C0012854 (UMLS CUI [3,1])
C2349182 (UMLS CUI [3,2])
C0728826 (UMLS CUI [3,3])
C0796346 (UMLS CUI [3,4])
Elig.phs000288.v2.p2.7
Item
The family must not show a single linkage peak from genome-wide microarray data (otherwise we would use target-capture to identify the gene mutation).
boolean
C1298908 (UMLS CUI [1,1])
C0023745 (UMLS CUI [1,2])
C3702387 (UMLS CUI [1,3])

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