ID

44998

Beschreibung

Principal Investigator: Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA MeSH: Colorectal Neoplasms,Sequence Analysis, DNA https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410 This project was designed to use next generation sequencing technology to screen the protein coding regions of the genome for low frequency variants in a panel of high-risk colorectal adenocarcinoma cases. Blood and cell-line DNA for colorectal cancer patients and a subset of quality control samples that had existing whole exome sequence data were analyzed using Illumina HiSeq sequencers. Samples from this project were from participants in the Women's Health Initiative (WHI) and the Diet, Activity, and Lifestyle Study (DALS).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410

Stichworte

  1. 01.07.22 01.07.22 - Dr. Christian Niklas
  2. 12.10.22 12.10.22 - Adrian Schulz
Rechteinhaber

Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

Hochgeladen am

1. Juli 2022

DOI

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Lizenz

Creative Commons BY 4.0

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dbGaP phs000410 Whole Exome Sequencing for Colorectal Cancer

Sample ID, analyte type, body site where from samples were collected, type of samples including tumor or normal tissue, histological type of samples obtained from participants involved in the "Whole Exome Sequencing for Colorectal Cancer" project.

pht002451
Beschreibung

pht002451

Sample ID
Beschreibung

sampid

Datentyp

text

Alias
UMLS CUI [1,1]
C1299222
Body site where sample was collected [Blood]
Beschreibung

body_site

Datentyp

string

Alias
UMLS CUI [1,1]
C1515974
UMLS CUI [1,2]
C0200345
UMLS CUI [1,3]
C1277698
Analyte type [DNA]
Beschreibung

analyte_type

Datentyp

string

Alias
UMLS CUI [1,1]
C0443354
UMLS CUI [1,2]
C0332307
UMLS CUI [1,3]
C0012854
Tumor status
Beschreibung

is_tumor

Datentyp

text

Alias
UMLS CUI [1,1]
C0475752
Cell or tissue type or subtype of sample [Blood, Buffy Coat, Cell Line]
Beschreibung

histological_type

Datentyp

string

Alias
UMLS CUI [1,1]
C0449475
UMLS CUI [1,2]
C0370003
UMLS CUI [2,1]
C0040300
UMLS CUI [2,2]
C0370003

Ähnliche Modelle

Sample ID, analyte type, body site where from samples were collected, type of samples including tumor or normal tissue, histological type of samples obtained from participants involved in the "Whole Exome Sequencing for Colorectal Cancer" project.

Name
Typ
Description | Question | Decode (Coded Value)
Datentyp
Alias
Item Group
pht002451
sampid
Item
Sample ID
text
C1299222 (UMLS CUI [1,1])
body_site
Item
Body site where sample was collected [Blood]
string
C1515974 (UMLS CUI [1,1])
C0200345 (UMLS CUI [1,2])
C1277698 (UMLS CUI [1,3])
analyte_type
Item
Analyte type [DNA]
string
C0443354 (UMLS CUI [1,1])
C0332307 (UMLS CUI [1,2])
C0012854 (UMLS CUI [1,3])
Item
Tumor status
text
C0475752 (UMLS CUI [1,1])
Code List
Tumor status
CL Item
Is not a tumor (N)
CL Item
Is Tumor (Y)
histological_type
Item
Cell or tissue type or subtype of sample [Blood, Buffy Coat, Cell Line]
string
C0449475 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
C0040300 (UMLS CUI [2,1])
C0370003 (UMLS CUI [2,2])

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