ID

44998

Beschrijving

Principal Investigator: Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA MeSH: Colorectal Neoplasms,Sequence Analysis, DNA https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410 This project was designed to use next generation sequencing technology to screen the protein coding regions of the genome for low frequency variants in a panel of high-risk colorectal adenocarcinoma cases. Blood and cell-line DNA for colorectal cancer patients and a subset of quality control samples that had existing whole exome sequence data were analyzed using Illumina HiSeq sequencers. Samples from this project were from participants in the Women's Health Initiative (WHI) and the Diet, Activity, and Lifestyle Study (DALS).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410

Trefwoorden

  1. 01-07-22 01-07-22 - Dr. Christian Niklas
  2. 12-10-22 12-10-22 - Adrian Schulz
Houder van rechten

Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

Geüploaded op

1 juli 2022

DOI

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Licentie

Creative Commons BY 4.0

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dbGaP phs000410 Whole Exome Sequencing for Colorectal Cancer

Sample ID, subject ID, sample sources, sample source ID, and IDs of samples used for whole exome sequencing and obtained from participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

pht002449
Beschrijving

pht002449

GECCO ID
Beschrijving

gecco_id

Datatype

text

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Beschrijving

sampid

Datatype

string

Alias
UMLS CUI [1,1]
C1299222
Source repository where samples originate
Beschrijving

samp_source

Datatype

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0370003
Sample ID used in the Source Repository
Beschrijving

source_sampid

Datatype

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0370003
Sample Use
Beschrijving

SAMPLE_USE

Datatype

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0457083

Similar models

Sample ID, subject ID, sample sources, sample source ID, and IDs of samples used for whole exome sequencing and obtained from participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

Name
Type
Description | Question | Decode (Coded Value)
Datatype
Alias
Item Group
pht002449
gecco_id
Item
GECCO ID
text
C2348585 (UMLS CUI [1,1])
sampid
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
samp_source
Item
Source repository where samples originate
string
C0449416 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
source_sampid
Item
Sample ID used in the Source Repository
string
C1299222 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
Item
Sample Use
text
C0370003 (UMLS CUI [1,1])
C0457083 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
Whole exome sequencing (WES_SRA)

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