ID

44998

Descripción

Principal Investigator: Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA MeSH: Colorectal Neoplasms,Sequence Analysis, DNA https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410 This project was designed to use next generation sequencing technology to screen the protein coding regions of the genome for low frequency variants in a panel of high-risk colorectal adenocarcinoma cases. Blood and cell-line DNA for colorectal cancer patients and a subset of quality control samples that had existing whole exome sequence data were analyzed using Illumina HiSeq sequencers. Samples from this project were from participants in the Women's Health Initiative (WHI) and the Diet, Activity, and Lifestyle Study (DALS).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410

Palabras clave

  1. 1/7/22 1/7/22 - Dr. Christian Niklas
  2. 12/10/22 12/10/22 - Adrian Schulz
Titular de derechos de autor

Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

Subido en

1 de julio de 2022

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs000410 Whole Exome Sequencing for Colorectal Cancer

Sample ID, subject ID, sample sources, sample source ID, and IDs of samples used for whole exome sequencing and obtained from participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

pht002449
Descripción

pht002449

GECCO ID
Descripción

gecco_id

Tipo de datos

text

Alias
UMLS CUI [1,1]
C2348585
Sample ID
Descripción

sampid

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1299222
Source repository where samples originate
Descripción

samp_source

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0370003
Sample ID used in the Source Repository
Descripción

source_sampid

Tipo de datos

string

Alias
UMLS CUI [1,1]
C1299222
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0370003
Sample Use
Descripción

SAMPLE_USE

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0370003
UMLS CUI [1,2]
C0457083

Similar models

Sample ID, subject ID, sample sources, sample source ID, and IDs of samples used for whole exome sequencing and obtained from participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht002449
gecco_id
Item
GECCO ID
text
C2348585 (UMLS CUI [1,1])
sampid
Item
Sample ID
string
C1299222 (UMLS CUI [1,1])
samp_source
Item
Source repository where samples originate
string
C0449416 (UMLS CUI [1,1])
C0370003 (UMLS CUI [1,2])
source_sampid
Item
Sample ID used in the Source Repository
string
C1299222 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0370003 (UMLS CUI [1,3])
Item
Sample Use
text
C0370003 (UMLS CUI [1,1])
C0457083 (UMLS CUI [1,2])
Code List
Sample Use
CL Item
Whole exome sequencing (WES_SRA)

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