ID

44998

Descripción

Principal Investigator: Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA MeSH: Colorectal Neoplasms,Sequence Analysis, DNA https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410 This project was designed to use next generation sequencing technology to screen the protein coding regions of the genome for low frequency variants in a panel of high-risk colorectal adenocarcinoma cases. Blood and cell-line DNA for colorectal cancer patients and a subset of quality control samples that had existing whole exome sequence data were analyzed using Illumina HiSeq sequencers. Samples from this project were from participants in the Women's Health Initiative (WHI) and the Diet, Activity, and Lifestyle Study (DALS).

Link

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000410

Palabras clave

  1. 1/7/22 1/7/22 - Dr. Christian Niklas
  2. 12/10/22 12/10/22 - Adrian Schulz
Titular de derechos de autor

Ulrike Peters, PhD, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

Subido en

1 de julio de 2022

DOI

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Licencia

Creative Commons BY 4.0

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dbGaP phs000410 Whole Exome Sequencing for Colorectal Cancer

Subject ID, subject source, subject source ID, consent group and affection status of participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

pht002448
Descripción

pht002448

GECCO ID
Descripción

gecco_id

Tipo de datos

text

Alias
UMLS CUI [1,1]
C2348585
Consent group as determined by DAC
Descripción

consent

Tipo de datos

text

Alias
UMLS CUI [1,1]
C0021430
UMLS CUI [1,2]
C1257890
Source repository where subjects originate [Coriell, WHI_SHARe]
Descripción

subj_source

Tipo de datos

string

Alias
UMLS CUI [1,1]
C0449416
UMLS CUI [1,2]
C0681850
Subject ID used in the Source Repository [for Coriell, dbGaP subject ids for WHI participants]
Descripción

source_subjid

Tipo de datos

string

Alias
UMLS CUI [1,1]
C2348585
UMLS CUI [1,2]
C0449416
UMLS CUI [1,3]
C0681850
Case control status of the subject
Descripción

affection_status

Tipo de datos

text

Alias
UMLS CUI [1,1]
C1706256
UMLS CUI [1,2]
C0449438
UMLS CUI [2,1]
C0009932
UMLS CUI [2,2]
C0449438

Similar models

Subject ID, subject source, subject source ID, consent group and affection status of participants involved in the " Whole Exome Sequencing for Colorectal Cancer" project.

Name
Tipo
Description | Question | Decode (Coded Value)
Tipo de datos
Alias
Item Group
pht002448
gecco_id
Item
GECCO ID
text
C2348585 (UMLS CUI [1,1])
Item
Consent group as determined by DAC
text
C0021430 (UMLS CUI [1,1])
C1257890 (UMLS CUI [1,2])
Code List
Consent group as determined by DAC
CL Item
General Research Use (MDS) (GRU-MDS) (1)
CL Item
General Research Use (NPU, MDS) (GRU-NPU-MDS) (2)
subj_source
Item
Source repository where subjects originate [Coriell, WHI_SHARe]
string
C0449416 (UMLS CUI [1,1])
C0681850 (UMLS CUI [1,2])
source_subjid
Item
Subject ID used in the Source Repository [for Coriell, dbGaP subject ids for WHI participants]
string
C2348585 (UMLS CUI [1,1])
C0449416 (UMLS CUI [1,2])
C0681850 (UMLS CUI [1,3])
Item
Case control status of the subject
text
C1706256 (UMLS CUI [1,1])
C0449438 (UMLS CUI [1,2])
C0009932 (UMLS CUI [2,1])
C0449438 (UMLS CUI [2,2])
Code List
Case control status of the subject
CL Item
Control (0)
CL Item
Case (1)
CL Item
Other (3)

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